Pairwise Alignments

Query, 308 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  186 bits (471), Expect = 7e-52
 Identities = 108/302 (35%), Positives = 167/302 (55%), Gaps = 12/302 (3%)

Query: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60
           M+ F DM LF  ++++    AA  +L LS   V+ RL  LEDR GV+LLNRSTR L +T 
Sbjct: 1   MNPFEDMRLFCQVMESGSFTAAAEQLGLSKQFVSRRLIQLEDRLGVRLLNRSTRRLDVTP 60

Query: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120
            G  Y+++ L +L+ V + E  +   + E RGT+++SAP      H+  +L  F  +YP+
Sbjct: 61  LGQSYYESALRLLSEVEQVEQGIAGQNSEPRGTIRLSAPLSFAMAHLGCLLPLFLRRYPQ 120

Query: 121 VVPYLYLNDNISNLAESGLDVVIRYGELADSSLISRKLATSRRVLCASPAYLARKGIPKT 180
           V   + L+D   +L   G D+V+R G L DS+LI+R++A+  RV CASP YLA +G P  
Sbjct: 121 VAVEVDLSDRPVDLIGEGYDLVLRIGTLEDSTLIARRIASIPRVYCASPDYLALRGTPHK 180

Query: 181 PQDLAQHDCLAMVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMGIALK 240
           P DLA+HDCL      +    W F+   Q   + V  +   ++G+++R  A+AG+G+   
Sbjct: 181 PDDLAEHDCLPYGHGRQVQ--WRFKGKVQ--ALNVSGRMRVNNGDLLRDTAIAGLGVTYL 236

Query: 241 SILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDFLIEQ 300
               V D L   RLVTVLD +        +     L+ +Y   +   + ++  ++FL E+
Sbjct: 237 PTFIVGDALKDGRLVTVLDEF--------APEALTLSAVYPQHRQGSRPVQALVEFLRER 288

Query: 301 CA 302
            A
Sbjct: 289 LA 290