Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  229 bits (584), Expect = 2e-64
 Identities = 145/404 (35%), Positives = 213/404 (52%), Gaps = 12/404 (2%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSFS L LS  ++ A+     T P+ IQ   IP +L  +DV  LA TG+GKT A+ LP+L
Sbjct: 1   MSFSELGLSDKVLAAVADTGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 82  ERLKTSPEQ----QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 137
             L+    +    + L+L PTRELA QV E  T  G    LN   L GGV   +Q   L 
Sbjct: 61  TLLEQGRARARMPRTLILEPTRELAAQVEENFTRYGKYSKLNVALLIGGVSFGDQDTKLV 120

Query: 138 ENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196
              ++L+AT GRL D  + G L L+ +  LV+DEADR+LDMGF P ++ +       RQT
Sbjct: 121 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQT 180

Query: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGS--KTQALVALLK 254
           +  SAT   +++    Q + +P +V  +   S    V + L    +    K + L  L++
Sbjct: 181 LFFSATMPPEIQRLVSQFLSSPVRVEVSKPASTATTVTQELVASGREDYEKREVLRELIR 240

Query: 255 QHQWPQV-LVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
             +  Q  ++F   K +   L + L K G  A  LHGD  Q  R  AL EF+NG   +L+
Sbjct: 241 SCENLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDEFRNGEATLLV 300

Query: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAT 373
           A+D+ ARG+ I  +  V N+++P H+E YVHR+GRT RAG+ G A ++V H +  +L+A 
Sbjct: 301 ASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRAGTAYTMVTHLDAKSLSAI 360

Query: 374 RTLTQRELPVQNLEGFPVTDQPSTGESKRAPRDKQANRRTQNKK 417
             L    +P     G P+ D P   E +     +   +R  +K+
Sbjct: 361 EKLIGNPIP---WHGAPLGDAPPASERRGRDDGRLRGKRRMDKE 401