Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  272 bits (696), Expect = 2e-77
 Identities = 162/411 (39%), Positives = 237/411 (57%), Gaps = 16/411 (3%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF+SL LS  L++A+  A  TEP+ +Q   IPA+L G+D+   A TG+GKT  + LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 82  ERL----------KTSPEQ-QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKT 130
           ERL          +  P Q + LVL PTRELA QV +        L   + C+ GGV   
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 131 EQQNALAENPNILVATTGRLFDLT-QSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQ 189
            Q  A++   ++LVA  GRL DL  Q  + L+ V  LVLDEADR+LDMGF   V+ + ++
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 190 TAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQAL 249
               RQ ++ SATFS D+   A +L+  P ++   P N+  + +++ ++ +    K   L
Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240

Query: 250 VALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTT 309
             L+    W QVLVF   K  A+ L + L+K G+ A  +HG+KSQ+ R  ALA+FK G+ 
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300

Query: 310 QVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDA 369
           ++L+ATD+ ARG+ I+ LP V+NFELP   E YVHR+GRT RAG+ G A+SLV   E   
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 370 LNATRTLTQRELPVQNLEGFPVTDQPSTGESKRAPRDKQANRRTQNKKSVK 420
           L +   +T++++   +L GF   D  +    K   R++   R  +N +  K
Sbjct: 361 LKSIERMTKQKIADGDLMGF---DASAVEAEKPEARERPDVRNPRNPRGPK 408