Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  280 bits (717), Expect = 5e-80
 Identities = 162/395 (41%), Positives = 237/395 (60%), Gaps = 12/395 (3%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M+F++L L   L++AL       P+ +Q   IPA+L G+D+ A A TG+GKT  + +PLL
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 82  ERLK------TSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNA 135
           + L        +   +AL+L PTRELA QV   +      L L T  + GGV    Q   
Sbjct: 61  QLLTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQMMK 120

Query: 136 LAENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVR 194
           L +  +ILVAT GRL DL  Q+ L+LN++ TLVLDEADR+LD+GF  ++  +       R
Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR 180

Query: 195 QTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLK 254
           QT++ SATFSDD++L A Q++  P  +  +P N     V++ +  V+K  K +  V L++
Sbjct: 181 QTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLMR 240

Query: 255 QHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIA 314
           + +W QVLVF   +   D+L  KL   GI A  +HGDK Q+ R+ AL  FK+   Q+L+A
Sbjct: 241 KGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILVA 300

Query: 315 TDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATR 374
           TD+ ARG+ IE LP+V+NF+LP+ AE Y+HR+GRT RAG  G A+SLVC  E++ L+A  
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIE 360

Query: 375 TLTQRELPVQNLEGFP----VTDQPSTGESKRAPR 405
            LT++ L     + F     V D  ++G+  + P+
Sbjct: 361 MLTRQTLTRHMEQDFEPEHRVPDTDASGQVVKKPK 395