Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  278 bits (711), Expect = 3e-79
 Identities = 160/378 (42%), Positives = 229/378 (60%), Gaps = 11/378 (2%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M+F  L L+  +++A+ +     P+ IQ   IPA+L G D+   A TG+GKT A+ LP+L
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPML 60

Query: 82  ERLKTSPEQ---------QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQ 132
            +L  S            +ALVL PTRELA QV E +   G  L L++  + GGV    Q
Sbjct: 61  HKLSMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQ 120

Query: 133 QNALAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTA 191
            + L +  +ILVAT GRL DL Q G L L++V  L+LDEADR+LDMGF   V+ + +   
Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180

Query: 192 GVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVA 251
             +Q+++ SATFSDD++  A  L++ P  +   P N+  Q + + ++ V +G K   L  
Sbjct: 181 KEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH 240

Query: 252 LLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQV 311
           ++ +++W QVLVF   K  A+S+ + L K GI A  LHG+KSQS R  ALA FK+G  + 
Sbjct: 241 IINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA 300

Query: 312 LIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALN 371
           L+ATD+ ARGI I+ LP V+N+E+P  +E YVHR+GRT RAG  G A+S VC  E   + 
Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQ 360

Query: 372 ATRTLTQRELPVQNLEGF 389
                T++ +PVQ +EGF
Sbjct: 361 EIERFTKQTIPVQIVEGF 378