Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  254 bits (649), Expect = 4e-72
 Identities = 170/425 (40%), Positives = 228/425 (53%), Gaps = 21/425 (4%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M F SL L+  L+ A  ++    P+AIQ   IPA+L G+DV   A TGSGKT A+ LPLL
Sbjct: 1   MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60

Query: 82  ERLK------TSPEQQALVLVPTRELAMQVSEVLTHVGTALG--LNTLCLCGGVDKTEQQ 133
           +RL       ++   +ALVLVPTRELA QV E L  +   L   L  +   GGV    Q 
Sbjct: 61  QRLGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQM 120

Query: 134 NALAENPNILVATTGRLFDLTQ-SGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAG 192
            +L    +I+VAT GRL DL   + LRL+ V TLVLDEADRL D+GF  ++  + +    
Sbjct: 121 MSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPR 180

Query: 193 VRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVAL 252
            RQ ++ SATF   ++  A   +R P  +    E      + + +  V+   +TQ L  L
Sbjct: 181 QRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHL 240

Query: 253 LKQHQ--WPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQ 310
           LKQH+  W +VLVF+  +  A ++ +KL K GI A   HGD +Q  R   LA+FK     
Sbjct: 241 LKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWD 300

Query: 311 VLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDAL 370
           V+IATDL ARGI I  LPVVIN++LP     Y+HR+GRT RAG+ G+A+S V        
Sbjct: 301 VVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHF 360

Query: 371 NATRTLTQRELPVQNLEGF-------PVTDQPSTGESK-RAPRDKQANRRTQNKKSVK-Q 421
                     LP + +EGF       PV D   TG  K + P  K   R    K + + +
Sbjct: 361 RLIEKRQGLSLPRERVEGFEPTEVAPPVVDASGTGGIKGKRPSKKDKLRAAAAKAAAREE 420

Query: 422 FQGKS 426
             GKS
Sbjct: 421 VAGKS 425