Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  243 bits (620), Expect = 9e-69
 Identities = 155/420 (36%), Positives = 229/420 (54%), Gaps = 17/420 (4%)

Query: 23  MSFSSLALSADLIQALP-KAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M F+ L LS  +I+AL  K   EP+ IQ   IP +L G+D+  +A TG+GKT A+ LP L
Sbjct: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60

Query: 82  ERLKTSPEQ------QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNA 135
           +    +P+       + LVL PTRELA Q+++     G  L L+   + GGV   +Q  A
Sbjct: 61  DYFARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA 120

Query: 136 LAENPNILVATTGRLFDLT-QSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVR 194
           L+   +I+VAT GRL DL  Q    +      VLDEAD+++DMGF   ++ +A      R
Sbjct: 121 LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR 180

Query: 195 QTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLK 254
           Q +  SAT   +++  A Q +  P +VS  P+++  + V++ L  VN+  K   L  +LK
Sbjct: 181 QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLK 240

Query: 255 QHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIA 314
             +  + L+F   K  AD + + L  AGI A  +HG+KSQ++R  AL  F++G  ++L+A
Sbjct: 241 TEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVA 300

Query: 315 TDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATR 374
           TD+ ARGI +  +  VINFE+P   E YVHR+GRTARAG  GIA+S V   E   L A  
Sbjct: 301 TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE 360

Query: 375 TLTQRE-----LPVQNLEGFPVTDQPSTGESKRAPRDKQAN--RRTQNKKSVKQFQGKSR 427
             T+ +     LP   LE   V + P     +R P    A   +R + ++  ++ Q   R
Sbjct: 361 RATKVKPEIVPLPENFLEA--VRNLPKPAPQRRGPSQSPAQQAKRAEGQRRYQEGQKAQR 418