Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  271 bits (693), Expect = 4e-77
 Identities = 162/409 (39%), Positives = 235/409 (57%), Gaps = 14/409 (3%)

Query: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF+SL LS  L++A+  A  T+P+ +Q   IPA+L G+D+   A TG+GKT  + LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 82  ERL----------KTSPEQ-QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKT 130
           ERL          +  P Q + LVL PTRELA QV +        L L + C+ GGV   
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 131 EQQNALAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQ 189
            Q  A+A+  ++LVA  GRL DL   G + L  V  LVLDEADR+LDMGF   V+ + ++
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 190 TAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQAL 249
               RQ ++ SATFS D+   A +L+  P ++   P N+  + +++ +Y +    K   L
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240

Query: 250 VALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTT 309
             L+    W QVLVF   K  A+ L + L K G+ A  +HG+KSQ+ R  ALA+FK  + 
Sbjct: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300

Query: 310 QVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDA 369
           +VL+ATD+ ARG+ I+ LP V+NFELP   E YVHR+GRT RAG+ G A+SLV   E   
Sbjct: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 370 LNATRTLTQRELPVQNLEGFPVTD-QPSTGESKRAPRDKQANRRTQNKK 417
           L +   +T++ +   +L GF  +  +    E++  P++     R Q  +
Sbjct: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQAR 409