Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., ATP-dependent RNA helicase RhlE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  239 bits (611), Expect = 9e-68
 Identities = 151/381 (39%), Positives = 212/381 (55%), Gaps = 10/381 (2%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           M F++L L+  L QA  +   T P+ IQ   IPA+L G D+ A A TGSGKT AY LPLL
Sbjct: 1   MPFTALGLAPALAQAAAELGFTTPTPIQREAIPAVLAGHDLLATAQTGSGKTAAYALPLL 60

Query: 82  ERLKT-----SPEQ-QALVLVPTRELAMQVSEVLTHVGTALGLN--TLCLCGGVDKTEQQ 133
           +RL       SP + +ALV+VPTRELA QV E +  +   L        + GGV    Q 
Sbjct: 61  QRLSQGAAPHSPRRVRALVVVPTRELAAQVGEAVRALAQHLPRQPKVAVVFGGVSINPQM 120

Query: 134 NALAENPNILVATTGRLFDLTQ-SGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAG 192
            AL    +++VAT GRL DL + + LRL+ V  LVLDEADRLLD+GF  ++  + +    
Sbjct: 121 MALRGGADVVVATPGRLLDLVEHNALRLSAVELLVLDEADRLLDLGFADELARVLALLPA 180

Query: 193 VRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVAL 252
            RQ +  SATF   ++  A  L+  P ++      + +  + +  +LV+   +TQ L  L
Sbjct: 181 QRQNLFFSATFPVAVQALADALLHQPQRIDVPAAPTDSAVILQQAFLVDSTRRTQLLRQL 240

Query: 253 LKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVL 312
           ++   W +VLVF+  +  A+ +  KL++  + AT  HG  SQ  R+ AL EFK+    V+
Sbjct: 241 IQDQGWQRVLVFVATQYAAERVAAKLHQGDLYATSFHGGLSQGARQQALGEFKDKRWDVV 300

Query: 313 IATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNA 372
           + TDL ARGI IE LPVV+N++LP     YVHR+GRT RAG  G+A+S V          
Sbjct: 301 VTTDLAARGIDIEQLPVVVNYDLPRSTVDYVHRIGRTGRAGADGLAVSFVSPATEAHWRL 360

Query: 373 TRTLTQRELPVQNLEGFPVTD 393
                   LP++   GF  T+
Sbjct: 361 IEKRMGLSLPLEVRPGFEPTE 381