Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 608 a.a., ATP-dependent RNA helicase RhlE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  277 bits (709), Expect = 6e-79
 Identities = 168/409 (41%), Positives = 236/409 (57%), Gaps = 22/409 (5%)

Query: 2   IKSTPAIIRPTLFFEYSGIQPMSFSSLALSADLIQALPKAITE-PSAIQTLVIPAMLTGK 60
           +   P+ +   LF+       M+F  L L+  ++QA+ +   E P+ IQ   IPA+L G+
Sbjct: 1   VADAPSALDGRLFY-------MTFDDLNLAPAIVQAVREHGYETPTPIQVEAIPAVLAGR 53

Query: 61  DVFALANTGSGKTLAYGLPLLERLKTSPEQQ---------ALVLVPTRELAMQVSEVLTH 111
           D+   A TG+GKT A+ LP+L RL  S   +         ALVL PTRELA QV E +  
Sbjct: 54  DLLGGAQTGTGKTAAFTLPMLHRLANSERAKSRFGGVGIRALVLTPTRELAAQVEESVRV 113

Query: 112 VGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDE 170
            G  L L +  + GGV    Q NA+    +ILVAT GRL DL Q G L L+ V  LVLDE
Sbjct: 114 YGKHLSLTSTVVFGGVGMNPQINAMKRGVDILVATPGRLLDLQQQGFLDLSTVQMLVLDE 173

Query: 171 ADRLLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSIN 230
           ADR+LDMGF   V+ + +     +Q+++ SATFSD+++  A  L++ P  +   P N+  
Sbjct: 174 ADRMLDMGFIHDVKKILALVPKEKQSLLFSATFSDEIRDLASALLKDPLHIQVTPRNTTV 233

Query: 231 QAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHG 290
           Q + + ++ V +G K   LV ++ QH W QVLVF   K  A+++ + L K GI A  LHG
Sbjct: 234 QRITQVIHPVGRGKKKALLVHIINQHNWSQVLVFTRTKFGANNVAEYLTKNGIHAMALHG 293

Query: 291 DKSQSEREAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTA 350
           +KSQ  R  ALA FK+G  + L+ATD+ ARGI I+ LP V+N+E+P  +E YVHR+GRT 
Sbjct: 294 NKSQGARTQALAGFKSGEIRALVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTG 353

Query: 351 RAGQHGIALSLVCHGEMDALNATRTLTQRELPVQNLEGFPVTDQPSTGE 399
           RAG  G A++LV   E   +      T++++PVQ    F     P  GE
Sbjct: 354 RAGNSGEAVNLVSLDEEGFMMEIERFTKQQIPVQIFPEF----MPEPGE 398