Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  284 bits (726), Expect = 4e-81
 Identities = 160/376 (42%), Positives = 231/376 (61%), Gaps = 9/376 (2%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF SL L+ D+++A+ +    EP+ IQ   IPA+L G+D+ A A TG+GKT  + LPLL
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 82  ERLKTSPEQ-------QALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQN 134
           + L T           +AL+L PTRELA Q+ E +      L + +L + GGV    Q  
Sbjct: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 135 ALAENPNILVATTGRLFDLT-QSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGV 193
            L    ++LVAT GRL DL  Q+ ++L+++  LVLDEADR+LDMGF   ++ + ++    
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
           RQ ++ SATFSDD+K  A++L+R P ++     N+ ++ V + ++ V+K  K + L  ++
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240

Query: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
            Q  W QVLVF   K  A+ L ++LNK GI +  +HG+KSQ  R  ALA+FK+G  +VL+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAT 373
           ATD+ ARG+ IE LP V+N+ELP   E YVHR+GRT RA   G ALSLVC  E   L   
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 374 RTLTQRELPVQNLEGF 389
             L ++E+P     G+
Sbjct: 361 EKLLKKEIPRITTPGY 376