Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Erwinia tracheiphila SCR3

 Score =  230 bits (586), Expect = 1e-64
 Identities = 143/371 (38%), Positives = 213/371 (57%), Gaps = 8/371 (2%)

Query: 24  SFSSLALSADLIQALP-KAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLE 82
           +FS L L+AD++++L      +PS IQ   IP +L G+DV  +A TGSGKT A+ LPLL 
Sbjct: 7   TFSDLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 83  RLKTSPEQ-QALVLVPTRELAMQVSEVLTHVGTAL-GLNTLCLCGGVDKTEQQNALAENP 140
            +    +  Q LVL PTRELA+QV+E +T     + GL+ + L GG     Q  AL + P
Sbjct: 67  NIDAGVKAPQILVLAPTRELAVQVAEAVTGFSKHMRGLSVVALYGGQRYDVQLRALRQGP 126

Query: 141 NILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTVMC 199
            ++V T GRL D  + G L L+ +  LVLDEAD +L MGF   V+ + +Q     QT + 
Sbjct: 127 QVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186

Query: 200 SATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWP 259
           SAT  + ++   ++ M+ P +V      +    + ++ Y    G KT ALV  L+   + 
Sbjct: 187 SATMPEAIRRITKRFMKDPQEVRIQSSITTRPDISQS-YWTAYGRKTDALVRFLEAEDFD 245

Query: 260 QVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATDLLA 319
             ++F+  K     + + L ++G  +  L+GD +Q+ RE  L   K+G   +LIATD+ A
Sbjct: 246 AAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 305

Query: 320 RGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDAL-NATRT--L 376
           RG+ +E + +V+NF++PM AE+YVHR+GRT RAG+ G AL  V + E   L N  RT  L
Sbjct: 306 RGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 365

Query: 377 TQRELPVQNLE 387
           T  E+ + N E
Sbjct: 366 TIPEVELPNAE 376