Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  280 bits (715), Expect = 9e-80
 Identities = 160/378 (42%), Positives = 231/378 (61%), Gaps = 9/378 (2%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF SL L+ ++++A+ +    EP+ IQ   IPA+L G+D+ A A TG+GKT  + LPLL
Sbjct: 1   MSFDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 82  ERL-KTSPEQQ------ALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQN 134
           E L K  P  +      AL+L PTRELA Q+ E +      L + +L + GGV    Q  
Sbjct: 61  ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120

Query: 135 ALAENPNILVATTGRLFDLT-QSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGV 193
            L    ++L+AT GRL DL  Q+ ++L+ +  LVLDEADR+LDMGF   ++ + ++    
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDGIEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
           RQ ++ SATFSD++K  A++L+  P +V     N+ ++ V + ++ V+K  K + L  ++
Sbjct: 181 RQNLLFSATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240

Query: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
            Q  W QVLVF   K  A+ L ++LNK GI +  +HG+KSQ  R  ALA+FK+G  +VL+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNAT 373
           ATD+ ARG+ IE LP V+N+ELP   E YVHR+GRT RA   G ALSLVC  E   L   
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 374 RTLTQRELPVQNLEGFPV 391
             L ++E+P     G+ V
Sbjct: 361 ERLLKKEIPRIETPGYEV 378