Pairwise Alignments

Query, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., ATP-dependent RNA helicase RhlE from Alteromonas macleodii MIT1002

 Score =  305 bits (782), Expect = 2e-87
 Identities = 175/411 (42%), Positives = 247/411 (60%), Gaps = 15/411 (3%)

Query: 23  MSFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
           MSF+ L L+  L++A+ K   + PS IQ   IP +L GKDV A A TG+GKT  +GLP+L
Sbjct: 1   MSFTQLGLAEPLLRAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL 60

Query: 82  ERLK-----TSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNAL 136
           +RL      +    +AL+L PTRELA QV E +      L L T  + GGV    Q   L
Sbjct: 61  QRLMEGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKL 120

Query: 137 AENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQ 195
            +  ++L+AT GRL DL  Q+ ++ +++  LVLDEADR+LDMGF   ++ +       RQ
Sbjct: 121 RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQ 180

Query: 196 TVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQ 255
           +++ SATFSD++   A+ + R P  +S  P N+  +AVQ+ L  ++K  KT AL+ L+KQ
Sbjct: 181 SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQ 240

Query: 256 HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315
            +W QVLVF   K  A+ + +KL ++ I +  +HG+KSQ  R  ALA+FKNG  +VL+AT
Sbjct: 241 QKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVAT 300

Query: 316 DLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATRT 375
           D+ ARGI I  LP+V+N +LP  A  YVHR+GRT RAG  G A S VC  E+  L    T
Sbjct: 301 DIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIET 360

Query: 376 LTQRELPVQNLEGF------PVT--DQPSTGESKRAPRDKQANRRTQNKKS 418
           L Q+ LP + LEGF      PVT   +P   +  + P+  Q    ++ K+S
Sbjct: 361 LIQKLLPRETLEGFEPQQAVPVTTLSKPKKPKKPKKPKAPQGESGSEGKRS 411