Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., multidrug transporter MATE from Pseudomonas simiae WCS417

 Score = 79.0 bits (193), Expect = 3e-19
 Identities = 91/425 (21%), Positives = 182/425 (42%), Gaps = 18/425 (4%)

Query: 28  LMSFQ-LVDSAFIGQ-LGVLPLAAQGFTMPIQMVIIGIQVGLGIATTAVISRAIGAGKTE 85
           L SF   ++  ++GQ LG   LAA     PI    I + +GLG   + +I +A GA +T 
Sbjct: 26  LQSFSGTLNGIYVGQMLGTQALAAVSGMFPIVFFFIALVIGLGAGASVLIGQAWGAQETA 85

Query: 86  YAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAIIDHYWLWWLASAWTGA 145
             K + G  + +G +   + A++  L  +P L  LG P  V      Y    +       
Sbjct: 86  MVKAITGATLTLGALVGVVAAVLGSLFARPALQALGTPVDVLDDAVGYAQKMMLIMPLLL 145

Query: 146 MLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTF----DLGIDGAAIATIIAFG 201
           +   Y  + R   +T+ P   +MV++++ L+L P  I  +     +GI  A  A ++   
Sbjct: 146 VFILYTQLLRGVSDTISPLLALMVSTLVGLLLTPALIRGWVGLPPMGIQSAVYAGLVGNA 205

Query: 202 VGIAIVAPKVAQRQWTSYQWQDLNISQSL--TALGHIMG---PAMLSQLLPPLSSMFATK 256
           + +  +  ++  +       ++L  +  L    LG ++    P  L  ++  LS +    
Sbjct: 206 LAMLFLILRLRHKNHVMAPDRELLAALRLDRVILGKVLRIGLPTGLQMVVLSLSELVILA 265

Query: 257 LLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEITHIRQLVRIACQF 316
           L+   G+ A AA+   ++   +     L++ ++   +  + +GA  +  I  ++R     
Sbjct: 266 LVNGHGSQATAAYGAVTQIVNYVQFPALSIAITASILGAQAIGAGRLERIGPILRTGLLI 325

Query: 317 VLGFQLLIALVTYVFATPLAELMTSETEVSQILNLHLVIVPI-SLGALGICMLMVSVANA 375
                  + ++ YV +  L  L  ++ + +++   HL+ + + S+   G   ++  +  A
Sbjct: 326 NTCLTGGLIVLGYVLSHWLLGLFITD-DAARVNAEHLLHIMLWSILVFGFQAVIGGIMRA 384

Query: 376 LGKSYVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALVGNIIAGWAAWLAYQKALRQ 435
            G   + + IS   +    LP  +L    +G+EG+++   V      + A LA Q A  +
Sbjct: 385 SGVVLMPVVISIFCVLCVELPMAYLLNAHFGLEGVWMAFPV-----TYLAMLALQTAYYR 439

Query: 436 LEGAH 440
           L   H
Sbjct: 440 LVWRH 444