Pairwise Alignments

Query, 444 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., Multidrug resistance protein NorM from Pseudomonas sp. DMC3

 Score = 72.4 bits (176), Expect = 3e-17
 Identities = 105/438 (23%), Positives = 182/438 (41%), Gaps = 51/438 (11%)

Query: 12  KQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVGLGIAT 71
           K L  +  P++   L+  +   VD+   G++G   LAA      I + +  +  G  +AT
Sbjct: 24  KNLLALALPIIIAQLATTAMGFVDAVMAGRVGPKDLAAVALGNSIWVPVFLLMTGTLLAT 83

Query: 72  TAVISRAIGAGKTE----YAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGA-PETV 126
           T  +++  GAGK        +Q   L +V+G     LIA  + +  +P+L L+   PE +
Sbjct: 84  TPKVAQRFGAGKHSEIGPIVRQALWLALVVG-----LIATSMLVAAEPVLHLMKVDPELI 138

Query: 127 FAIIDHYWLWWLASAWTGAMLYFYYSVCRAN--GNTLLPGTLMMVTSVLNLILDPIFIFT 184
              +   +L  +AS    A+ +++   C ++  G T     L +    LN+ L+ IFI+ 
Sbjct: 139 SPCMQ--YLHGIASG-LPAVAFYHVLRCTSDGIGRTRPAMVLGLCGLALNIPLNYIFIYG 195

Query: 185 F----DLGIDGAAIATIIAFGV------GIAIVAPKVAQRQ-WTSYQWQDLNISQSLTAL 233
                 +G  G   AT I   V      G    AP     + ++ + W    + + L ++
Sbjct: 196 HFGVPAMGGVGCGWATAIVMWVMALGLAGYERWAPAYRSSELFSRFDWPQWAVIKRLLSI 255

Query: 234 GHIMGPAMLSQLLPPLSSMFA--TKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLP 291
           G  +G A+ ++     SS+FA    L+ S G   VA   +         +   ++ M++ 
Sbjct: 256 GLPIGIAVFAE-----SSIFAVIALLIGSLGATVVAGHQIALNVSSLVFMIPYSLGMAVT 310

Query: 292 PMIGRMLGAKEITHIRQLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETEVSQILNL 351
             +G+ LG +E    R    +     L +  L A +      P+A + T++  V     +
Sbjct: 311 VRVGQALGREEPREARFAAGVGMGTALAYACLSASLMLALREPIAAIYTADPTV-----I 365

Query: 352 HLVIVPISLGAL--GICMLMVSVANALGKSYVALTISALRLFAFY---LP-------CLW 399
           H+  + I   AL      + V+ A AL           L LFA++   LP         W
Sbjct: 366 HIAAMLIVYSALFQFSDAIQVTAAGALRGYQDTRVTMILTLFAYWGIGLPVGYALGLTDW 425

Query: 400 LGAHFYGIEGLFIGALVG 417
           LG    G  GL+ G +VG
Sbjct: 426 LGEP-RGPSGLWQGLIVG 442



 Score = 42.4 bits (98), Expect = 3e-08
 Identities = 29/121 (23%), Positives = 54/121 (44%)

Query: 9   SLAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVGLG 68
           ++ K+L  +  P+   V +  S   V +  IG LG   +A     + +  ++  I   LG
Sbjct: 247 AVIKRLLSIGLPIGIAVFAESSIFAVIALLIGSLGATVVAGHQIALNVSSLVFMIPYSLG 306

Query: 69  IATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFA 128
           +A T  + +A+G  +   A+   G+ +        L A ++  LR+P+  +  A  TV  
Sbjct: 307 MAVTVRVGQALGREEPREARFAAGVGMGTALAYACLSASLMLALREPIAAIYTADPTVIH 366

Query: 129 I 129
           I
Sbjct: 367 I 367