Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., PAS domain S-box from Enterobacter asburiae PDN3

 Score =  246 bits (629), Expect = 1e-69
 Identities = 162/537 (30%), Positives = 263/537 (48%), Gaps = 50/537 (9%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MR N PVTQ E        L+STT   SHI YA+  F + +GY  + L+ +PHN++RHPD
Sbjct: 1   MRRNSPVTQNEYLLNDGSTLMSTTDTKSHITYANSAFIEASGYKEEHLLGEPHNLIRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MP EAF DMW  L+ G++W G+VKNR  NGDHYWV A  +P+ + G +  Y SVR  P+R
Sbjct: 61  MPAEAFGDMWFTLQQGETWTGLVKNRRHNGDHYWVRANVTPVWQGGSLTGYISVRNIPAR 120

Query: 121 QHVDNADKLYKEIKAGKTP----WQLKMPRTRLW------------QRLGLGFIVAAGVS 164
           + +  ++KLY +++  +      ++  + R  L+            +R+ LG    A +S
Sbjct: 121 EEIAASEKLYAKVRNNELKHYRFYKGLLVRRGLFSFMSLFKCLSTSKRIHLGIATTALLS 180

Query: 165 FAADRFF------AGAGLPLMLVLTILMAYQFTRRLETLSQEARKVFDNPLMELVYNGRV 218
             A   F      +G+ + L   L   +  Q  R ++++ Q+ + V      +  +  R+
Sbjct: 181 CLAVYLFPDKLVQSGSLVLLFTSLAYYLHAQIARPVKSIVQQMQSVVSGRKTDYYHFDRI 240

Query: 219 DDLSEIQLAMKMRQSELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLA 278
           DD+  +   +      LN++V  +      IG  ++  ++  A      +      +Q A
Sbjct: 241 DDIGLMMRLVNQSGLNLNSLVDDVGAQISGIGTISQQVAKEGAALQTRSEETADFLQQTA 300

Query: 279 TAITQMNITATEIAHNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIE 338
           +A+ ++   A+ +   A+ A +AT  A +  RD  H  E          + MK    +++
Sbjct: 301 SAVEEI---ASAVKQTAETAKEATEMA-DRTRDSAHRGE----------AMMKETIGMMQ 346

Query: 339 QLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTE 398
            +S  ++ I  ++ VI  IA QTN+LALNAA+EAARAG+ GRGFAVVA EVR LAQ S  
Sbjct: 347 SVSQDNSQIVDIISVIDRIAFQTNILALNAAVEAARAGEAGRGFAVVAAEVRNLAQHSAT 406

Query: 399 STKEIQEVITSIQTSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQ 458
           + KEI+ +I     S    VE +EQ              +  +LT ++  V  ++   ++
Sbjct: 407 AAKEIKALIEKNVASVNAGVEKVEQ--------------TETQLTVMIDNVLRVSSLIKE 452

Query: 459 IATAIEEMANVTEDMNRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQF 515
           I  A +E       +N S+  I  ++    G+ +N  +    L     +    +A F
Sbjct: 453 IGHATQEQTQALTLINASISRIGAMTHNNTGMVDNVTHAANHLTQRTTRLQQAIAVF 509