Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 506 a.a., aerotaxis sensor receptor Aer from Escherichia coli ECRC98

 Score =  245 bits (626), Expect = 2e-69
 Identities = 162/533 (30%), Positives = 269/533 (50%), Gaps = 62/533 (11%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           M ++  VTQ+         L+STT L S+I +A+  F  V+G+TL EL  QPHNMVRHPD
Sbjct: 1   MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGFTLQELQGQPHNMVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MP  AF DMW  LK G+ W G+VKNR KNGDHYWV A A P+   GK+  Y S+R   + 
Sbjct: 61  MPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPMVREGKISGYMSIRTRATD 120

Query: 121 QHVDNADKLYKEIKAGKT------------PWQLKMPRTRLWQRLGLGFIVAAGVSFAAD 168
           + +   + LYK + AG+T             W  K+P   L  R   G +    +  AA 
Sbjct: 121 EEIAAVEPLYKALNAGRTGKRIHKGLVVRKGWLGKLPSLPLRWR-ARGVMTLMFILLAAM 179

Query: 169 RFFAGAGLP--LMLVLTILMA-----YQFTRRLETLSQEARKVFDNPLMELVYNGRVDDL 221
            +F  A +   ++  L +L+A     +Q  R +E ++++A KV       + +  R D+L
Sbjct: 180 LWFVAAPVVTYILCALVVLLASACFEWQIVRPIENVARQALKVATGERNSVEHLNRSDEL 239

Query: 222 -------SEIQLAMKMRQSELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRET 274
                   ++ L  +   +++++ V  +++ S  + +     ++++  T DN+       
Sbjct: 240 GLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAKGTDELNEHTQQTVDNVQQTVATM 299

Query: 275 EQLATAITQMNITATEIAHNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTAS 334
            Q+A ++ Q + TA+       AA   ++ A NAA  G  A              M T  
Sbjct: 300 NQMAASVKQNSATAS-------AADKLSITASNAAVQGGEA--------------MTTVI 338

Query: 335 SVIEQLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQ 394
             ++ ++  +  IG +  +I  IA QTN+LALNAA+EAARAG+QG+GFAVVA EVR LA 
Sbjct: 339 KTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLAS 398

Query: 395 RSTESTKEIQEVITSIQTSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITM 454
           RS  +  +I+++I +       + + ++ G++         H +G  +  +++QV ++T 
Sbjct: 399 RSANAANDIRKLIDA-------SADKVQSGSQ-------QVHAAGRTMEDIVAQVKNVTQ 444

Query: 455 RNEQIATAIEEMANVTEDMNRSVQSISDVSTETLGLAENTQNECRQLAHNLAQ 507
              QI+ +  E A+    + R+V  ++ ++ +   L E +      + H  ++
Sbjct: 445 LIAQISHSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASR 497