Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., PAS domain-containing protein from Dickeya dianthicola ME23

 Score =  254 bits (649), Expect = 5e-72
 Identities = 165/541 (30%), Positives = 263/541 (48%), Gaps = 54/541 (9%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MR N PV+Q++        L+S TT  SHI YA+ +F +V+GY  +EL+NQPHN++RHPD
Sbjct: 1   MRKNYPVSQRQYPLDAKTKLMSVTTPDSHITYANADFINVSGYEPEELMNQPHNIIRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MPP AF DMW  LKAGK W G+VKNRCKNGDHYWV +  +P+K +GK++ Y SVR   + 
Sbjct: 61  MPPSAFADMWNTLKAGKIWTGVVKNRCKNGDHYWVRSSTTPLKRDGKLMGYMSVRTAATA 120

Query: 121 QHVDNADKLYKEIK----------------AGKTPWQL---KMP-RTRLWQRLGL--GFI 158
           + +  A+ LY ++                  G   W      MP R R+    GL  G  
Sbjct: 121 EEISQAEALYAQVNQGTLGNRAFHHGLLVYTGPLKWLSLFKAMPLRWRIRSYFGLLGGLP 180

Query: 159 VAAGVSFAADRFFAGAGLPLMLVLTIL----MAYQFTRRLETLSQEARKVFDNPLMELVY 214
           +A   +            P ++ L  L    +  Q  R +E + ++A +        L  
Sbjct: 181 LAVAFALLPKTALIWGLFPALMALACLFCELLVQQVARPVEQILEQAMRSAAGQANSLTP 240

Query: 215 NGRVDDLSEIQLAMKMRQSELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRET 274
             R D++  +  A+          V  +  +  ++  A    +Q +   A+  +      
Sbjct: 241 LNRADEIGMLMRAVNQSGMNFRTFVDDVNSNLQELKIACSEIAQGNHILAECCEKTEESL 300

Query: 275 EQLATAITQMNITATEIAHNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTAS 334
           +Q A ++ Q+  T   I  NA    DA+  A   A+D    V     A+ E+A+ M+  +
Sbjct: 301 QQTAASVEQLTAT---IKSNA----DASQRASQYAQDVNQVVNVGEQAVSEVANTMQAIT 353

Query: 335 SVIEQLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQ 394
              E++++       ++ V+ ++A QTN+LA+NAA+EAA AG+QG+ FAVVA EVR LAQ
Sbjct: 354 RASERITN-------IIGVLDNLAFQTNILAINAAVEAAHAGEQGKSFAVVASEVRSLAQ 406

Query: 395 RSTESTKEIQEVITSIQTSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITM 454
           RS  S K+I  +I +  +S R   + +   N+               +  +L +V D+T 
Sbjct: 407 RSAASAKDIAALIDNTLSSIRAGDQQVVHTNR--------------SMNNILVKVQDVTH 452

Query: 455 RNEQIATAIEEMANVTEDMNRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQ 514
               I+ A +E +   + +N +V  I +++ +   LA  + +    L   +A     V+ 
Sbjct: 453 LMNDISLATQEQSQGLQQINDAVNRIDELTHQNTALASQSNSATGHLQQQIASIAQAVSV 512

Query: 515 F 515
           F
Sbjct: 513 F 513