Pairwise Alignments

Query, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., PAS domain-containing protein from Dickeya dianthicola ME23

 Score =  263 bits (673), Expect = 9e-75
 Identities = 182/543 (33%), Positives = 274/543 (50%), Gaps = 63/543 (11%)

Query: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60
           MRNNQPVTQ+E  +     L+S T ++SHI YA+  F  V+G+  DE+  QPHN VRHPD
Sbjct: 1   MRNNQPVTQREYIFDKDATLMSVTDVNSHIVYANDAFIQVSGFEPDEIDGQPHNFVRHPD 60

Query: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120
           MP EAF+DMW+ LK  + W  +VKNR KNGDHYWV A A PI   G+   Y SVR  PSR
Sbjct: 61  MPVEAFRDMWQTLKQQEPWTALVKNRRKNGDHYWVRANAVPIVRQGRTTGYMSVRTQPSR 120

Query: 121 QHVDNADKLYKEI----------------KAGKTPW--QLKMPRTRLWQRLGLGFIVAAG 162
           Q VD A+ LY+ +                +AG T    +LK+   R W+  GL  ++ A 
Sbjct: 121 QEVDAAEALYQSMRHDQGKNLKLHKGVLFRAGLTGLFSRLKLISIR-WRLRGL-IMLTAL 178

Query: 163 VSFA----------ADRFFAGAGLP-LMLVLTILMAYQFTRRLETLSQEARKVFDNPLME 211
           +S+           AD + + A +  +ML+L  L+ +Q  + +E + Q+A  +    +  
Sbjct: 179 ISYVVFWTIHGNVDADFYISSAFMTGMMLLLDGLLEWQLIKPIEMVKQQALNIATGNVNT 238

Query: 212 LVYNGRVDDLSEIQLAMKMRQSELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQT 271
           + Y    D++  IQ A+         +V  I    + I  A+   +  S   +D+ +   
Sbjct: 239 IDYGNHADEIGTIQRAIGQLGLMFRWLVDDISTQVLNIRSASDELAHGSEDMSDHAERTA 298

Query: 272 RETEQLATAITQMNITATEIAHNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMK 331
              +Q A A+ Q+N T          AS     A +AA  G          IGEM    K
Sbjct: 299 ANVQQTAAAMNQINTTVQTNTTTTSEASQQAATACDAAISGGR-------VIGEME---K 348

Query: 332 TASSVIEQLSSQSAMIGQVMEVIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRK 391
           T  S++    + S  I  +  +I +IA QTN+LALNAA+EAARAG+QG+GFAVVA EVR 
Sbjct: 349 TMDSIV----ASSEKIAGITSIIDNIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRS 404

Query: 392 LAQRSTESTKEIQEVITSIQTSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSD 451
           LAQRS  +  EI+++I S       +VE +  G+        +   +GD    ++++V+ 
Sbjct: 405 LAQRSASAANEIKQLIES-------SVEQVRYGS-------THVRDAGDSTQNIVTRVNS 450

Query: 452 ITMRNEQIATAIEEMANVTEDMNRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSL 511
           ++     IA + +E      ++ R+V+ +  ++ +      +  N C Q +  L  Q   
Sbjct: 451 VSQLISHIADSTKEQTIGLSEIGRAVEELEQITQKN----ASQVNACAQASDQLKLQAHR 506

Query: 512 VAQ 514
           + Q
Sbjct: 507 LEQ 509



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 281 ITQMNITATEIAHNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQL 340
           +T++N  +  I+H A +  + T+      R    AVE+      + ASQ+   +   +QL
Sbjct: 445 VTRVNSVSQLISHIADSTKEQTIGLSEIGR----AVEELEQITQKNASQVNACAQASDQL 500

Query: 341 SSQSAMIGQVMEVIQ 355
             Q+  + Q + V +
Sbjct: 501 KLQAHRLEQALHVFR 515