Pairwise Alignments

Query, 247 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., hypothetical protein from Pseudomonas sp. S08-1

 Score = 44.3 bits (103), Expect = 2e-09
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 17/184 (9%)

Query: 5   LSKWLWIP-LLSLSAAFSVKADTLILTSLDWPP--YSGEGLAEKGASIAVVKAAVEAMGH 61
           +++W W+  LL+L  A    A+ L L + ++PP  ++ +G    G ++ +V+   E  GH
Sbjct: 3   ITRWRWLGCLLALYLAAGPHAEQLQLYTEEYPPLNFARDG-RPVGLAVDLVRELFERTGH 61

Query: 62  ELVVEFYPWSRAVHLAKGEAKYSGYFPEYFFEDNSLLFSDSIGKGPL-----GFAENVAN 116
              +   PW+R    A+ EA  +G F      +   LF      GP+     GF     +
Sbjct: 62  HGKISVVPWARGYQAAQHEAN-TGLFVTMRTAERERLFK---WVGPVCVVITGFYALKGS 117

Query: 117 PIQWSVLEDL-KPHTIGVVRDYINTPELDSMIAQGQLLSSAVNSDVQNLQKVAKGRVPLA 175
            I+   L++  +  TI V R + +  EL S   +G      V    Q +  +  GRVP+ 
Sbjct: 118 GIRIDSLDEAGRVGTIAVPRQWYSYQELQS---RGLPNLYGVIGPQQMMSMLRHGRVPVV 174

Query: 176 VIDS 179
           V D+
Sbjct: 175 VADN 178