Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  150 bits (378), Expect = 1e-40
 Identities = 89/288 (30%), Positives = 156/288 (54%)

Query: 6   NQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSV 65
           N+F   L+  + ++  + +E R  A QS   A +    +  Q  +++ +A A+ E++ + 
Sbjct: 424 NRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATASNEMSATA 483

Query: 66  ATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKIT 125
             VA + +  A  A  A +     +  I  +T DI+++  E+ +   E+  L +  E+I 
Sbjct: 484 HDVANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSEQIG 543

Query: 126 TVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANIT 185
           +VL VI  I+EQTNLLALNAAIEAARAGE GRGFAVVADEVRNLA +T  S E+I+  I 
Sbjct: 544 SVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVIE 603

Query: 186 NLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRT 245
            +   T  V   +       +  A ++  +  ++  +  +V +IS+ + QI  +A +Q  
Sbjct: 604 RIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQQSA 663

Query: 246 AIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
             EE++  +        ++  +A ++A  + +++A+++   + M +FR
Sbjct: 664 VAEEVNRNVSAIRTVTETLTGQATESAAISSQLNALASQQMKLMDQFR 711



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 1/163 (0%)

Query: 124 ITTVLNVINDI-SEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKA 182
           I  V  ++ DI S   +L    A  +    GE    F    D+++    +  QS  + + 
Sbjct: 387 INNVAAMLKDIASGDGDLTQRLAYAKKDELGELANWFNRFLDKLQPTIAQIKQSITEARG 446

Query: 183 NITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAE 242
                +       E +      +++ A   +   ++  +V +S    +  +    QSA E
Sbjct: 447 TADQSSAIARQTSEGMQVQFREIDQVATASNEMSATAHDVANSASNAASAARGADQSARE 506

Query: 243 QRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALI 285
             + IE+ +  I   +E  +         A  ++++ ++  +I
Sbjct: 507 GMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSEQIGSVLEVI 549