Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  152 bits (385), Expect = 1e-41
 Identities = 95/296 (32%), Positives = 164/296 (55%), Gaps = 6/296 (2%)

Query: 1   MTQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATE 60
           +   + Q T  LR ++  +++ + ++   A++     E+  A +  Q+ + E +AAA  +
Sbjct: 342 LQHSMTQMTLNLRGLIGNISDNAQQIASAAEELSTITEQTRAGVSNQREETEQVAAAMNQ 401

Query: 61  L---NHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKL 117
           +      VA  A+  +  A QA + T L D VV ++    + I ++ +EM R +Q M  L
Sbjct: 402 MLATAQEVARHAEQASIAAGQANHQTDLGDQVVTDV---VAQIEHLAHEMARSSQAMLAL 458

Query: 118 LIEGEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQST 177
             E +KI +VL+VI  +S+QTNLLALNAAIEAARAGE G+GFAVVADEVR+LA +T QS 
Sbjct: 459 QRESQKIGSVLDVIKSVSQQTNLLALNAAIEAARAGEAGQGFAVVADEVRSLAQRTQQSA 518

Query: 178 EQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIH 237
           E+I+  I  L+  T  V + L     L + +     ++  ++  +  +V +I E + QI 
Sbjct: 519 EEIEELIGGLHSGTQQVADILDYSRTLTDNSVGLARNAGDALSEIARTVLVIQEMNPQIA 578

Query: 238 QSAAEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
            +A EQ    EEI+ ++++  +A+      + Q A  +  ++ +   + + + +F+
Sbjct: 579 AAAEEQSAVAEEINRSVLKVRDASEQTAAASEQTAAASIELARLGTDLQQCVGQFK 634



 Score = 27.7 bits (60), Expect = 7e-04
 Identities = 53/265 (20%), Positives = 102/265 (38%), Gaps = 36/265 (13%)

Query: 32  QSREKAEENVAQIDQQKHQLETIAAAATELNHSVATVAQTVNETAEQALNATRLTDNVVH 91
           Q  EKA + V  + Q   Q E  A +      S+   AQ VN+ AE+ L   +       
Sbjct: 161 QEDEKALDAVENLRQAIEQAEDRAQSPAWAASSLDAYAQAVND-AERNLELAQAA----- 214

Query: 92  EIGSATSDISNMCNEMVRVNQEMSKL----LIEGEKITTVLNVINDISEQTNLLALNAA- 146
            +     D + + N ++ +   +++L    L   +    +   ++ +  Q++LL+ +   
Sbjct: 215 -VAKLPVDSTALKNAVLEIRTRLTRLKEAQLTTEKSQNQLEQQLDQLLGQSDLLSQDQTQ 273

Query: 147 ---IEAARAGEQGRGFAVVADEVRNLA--VKTSQSTEQIKANITNLNRAT---------- 191
               EA +A  Q  G    A  +  LA  V   Q    ++  ++  NR            
Sbjct: 274 RRDHEAEQARTQTLGVTAAALLLGVLAAWVIAGQIVTPLRKALSVANRIAEGDLSHEVQT 333

Query: 192 ------NTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRT 245
                   ++  +T+MT  L      +S    + + + S+ E +S  ++Q     + QR 
Sbjct: 334 RRKDELGQLQHSMTQMTLNLRGLIGNIS---DNAQQIASAAEELSTITEQTRAGVSNQRE 390

Query: 246 AIEEISLAIVEASEAANSVYDRAAQ 270
             E+++ A+ +    A  V   A Q
Sbjct: 391 ETEQVAAAMNQMLATAQEVARHAEQ 415