Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  142 bits (359), Expect = 2e-38
 Identities = 90/289 (31%), Positives = 152/289 (52%)

Query: 6   NQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSV 65
           N+F   +R ++  +  AS+ L+  ++ + E A        +Q+  +E ++ A  E+  + 
Sbjct: 357 NKFLAAIRQLIQHIGAASANLQNASKVNSEVAHNMNEAAGRQREAVELVSTAFNEMVATA 416

Query: 66  ATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKIT 125
             VA++ +  AE A N  R       +I   T +++ +   +   +Q M +L      I 
Sbjct: 417 NEVARSCSGAAESAENGHRRVAEGKQQIEVTTDNVNRLGRRLTESSQAMVELEAGSRSIN 476

Query: 126 TVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANIT 185
            +L  I  I+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR LA +TS ST +I+  + 
Sbjct: 477 QILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALAKRTSDSTGEIEQLLG 536

Query: 186 NLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRT 245
            L   T  V +++     L   +   +  ++ S   +++SV  I +++ QI  +A EQ +
Sbjct: 537 TLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEGIQTSVNEIRDQNLQISAAAEEQHS 596

Query: 246 AIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFRT 294
             EEI+  I +  + A  V   A    + + R+S +S  +   + +F++
Sbjct: 597 VAEEINRHIQQIYDEARLVESLANSAQDDSGRLSNLSDELNGLVGRFKS 645



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 29/157 (18%), Positives = 64/157 (40%), Gaps = 7/157 (4%)

Query: 2   TQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATEL 61
           ++ INQ   T+R I  + N  +    ++A ++ ++        D+ +   +  + +  E+
Sbjct: 472 SRSINQILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALAKRTSDSTGEI 531

Query: 62  NHSVATV---AQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLL 118
              + T+    Q V +     L+ +R + + +     +   I    NE+   N ++S   
Sbjct: 532 EQLLGTLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEGIQTSVNEIRDQNLQISAAA 591

Query: 119 IE----GEKITTVLNVINDISEQTNLLALNAAIEAAR 151
            E     E+I   +  I D +     LA +A  ++ R
Sbjct: 592 EEQHSVAEEINRHIQQIYDEARLVESLANSAQDDSGR 628