Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  142 bits (357), Expect = 2e-38
 Identities = 94/289 (32%), Positives = 149/289 (51%), Gaps = 14/289 (4%)

Query: 12  LRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSVATVAQT 71
           LR +   +N +S  +   +Q+  + +  N   +   + ++E I  A     H +A   Q 
Sbjct: 269 LRDMTKGINLSSQTVAESSQELSQSSLRNAESVAMAQCEVEQIVTAV----HQMAATVQD 324

Query: 72  VNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRV----NQEMSKLLIEGEKITTV 127
           V   AE A +A    D+          D  NM +E+       N  M +L  E   I  V
Sbjct: 325 VARNAESAASAASEADSAALYSQQKAKDAVNMISELAETIEQSNMAMGRLKNETGNIGGV 384

Query: 128 LNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANITNL 187
           L VI  +++QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +T ++T +I+  I +L
Sbjct: 385 LEVIKSVADQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKATSEIEGLIASL 444

Query: 188 NRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRTAI 247
            +  +   + + R      ++   VS +  ++  + + +E I+  + QI  +A +Q T  
Sbjct: 445 QKIADETSQHMQRCKSSSAQSVSGVSEAGDAVSTIVTMIERINGMNHQIAAAAEQQSTVA 504

Query: 248 EEISLAIVEASEAAN---SVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
           E+IS  IV  SE+A    + +  A Q +EG  R    S  + E++++F+
Sbjct: 505 EQISRGIVTVSESAEQSAAAFRSAQQESEGLART---SVTLRENISRFQ 550



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 27/159 (16%), Positives = 64/159 (40%), Gaps = 6/159 (3%)

Query: 2   TQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATEL 61
           T  I      ++++  + N  +    ++A ++ E         D+ +   +    A +E+
Sbjct: 378 TGNIGGVLEVIKSVADQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKATSEI 437

Query: 62  NHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEG 121
              +A++ +  +ET++        +   V  +  A   +S +   + R+N    ++    
Sbjct: 438 EGLIASLQKIADETSQHMQRCKSSSAQSVSGVSEAGDAVSTIVTMIERINGMNHQIAAAA 497

Query: 122 EKITTVLNVIN----DISEQTNLLALNAAIEAARAGEQG 156
           E+ +TV   I+     +SE     A  AA  +A+   +G
Sbjct: 498 EQQSTVAEQISRGIVTVSESAEQSA--AAFRSAQQESEG 534