Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  141 bits (356), Expect = 4e-38
 Identities = 88/279 (31%), Positives = 150/279 (53%)

Query: 15  IVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSVATVAQTVNE 74
           ++ ++N  S  L  +A +S E +E  +A++ +QK Q + +AAA TEL  S   VA++ + 
Sbjct: 380 LLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDG 439

Query: 75  TAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKITTVLNVINDI 134
             ++   A         ++ +       + ++M        KL      I ++L+VI  I
Sbjct: 440 AKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGI 499

Query: 135 SEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANITNLNRATNTV 194
           +EQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA +T  STE+I+  I NL  ++  V
Sbjct: 500 AEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQV 559

Query: 195 EEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRTAIEEISLAI 254
            E + R         E+     S+++++   +  I E +DQ+  +A EQ    + ++  +
Sbjct: 560 VEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHV 619

Query: 255 VEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
              +E A+     A ++A  ++ ++ ++A   + +A F+
Sbjct: 620 TGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHFK 658



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 66/314 (21%), Positives = 133/314 (42%), Gaps = 50/314 (15%)

Query: 23  SSELRLQAQQSREKAEENVAQIDQQ--KHQLETI--AAAATELNHSVATVAQTVNETAEQ 78
           +++L LQ Q S +++  N A++        L+ I  A A T+LN     +++ + E A +
Sbjct: 160 AADLLLQ-QSSGQRSMRNKAELITSGIARDLKNIRRADAKTDLNELEKVLSKDI-EMARK 217

Query: 79  ALNATRLTDNV-------VHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKITTVL--- 128
            L+   + D+V       ++ +       + +   M +  Q  + LLI+ +++   L   
Sbjct: 218 RLDRVLVPDDVKARYIANLNRLQELALGQNGLLATMRKAQQLENALLIQNQQVDASLASS 277

Query: 129 --------NVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQI 180
                        I++Q+ +LA +AA+ +A         A+ A     +   T++S ++ 
Sbjct: 278 LAKLDDMAKYAGSIAQQSRMLA-DAAVSSANFWIMAVS-AISAAVALVIGYTTARSIQKP 335

Query: 181 KANITN-------------LNRATNTVEEELTRMTGLL-EKTAEKVSHSQSSIRNVKSSV 226
              I +             +N  T      L+R   +L +KT E +S   +  R++ +  
Sbjct: 336 LQKINHELAYMARGDMTRRINYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEA 395

Query: 227 EMISERSDQIHQSAAEQRTAIEEISLAIVE----ASEAANSV------YDRAAQNAEGTK 276
              +E S++      EQ++  ++++ AI E    A+E A S        DRA   A+  +
Sbjct: 396 SRSAEISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGR 455

Query: 277 RVSAISALIAEHMA 290
           +  A +  I E +A
Sbjct: 456 QKVATTRRITEQLA 469



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 54/287 (18%), Positives = 113/287 (39%), Gaps = 38/287 (13%)

Query: 4   GINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIA-------- 55
           G N    T+R    +     + L +Q QQ       ++A++D       +IA        
Sbjct: 245 GQNGLLATMR----KAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQSRMLAD 300

Query: 56  AAATELNHSV-------ATVAQTVNETAEQALNATRLTDNVVHEIG-SATSDISNMCNEM 107
           AA +  N  +       A VA  +  T  +++   +    + HE+   A  D++   N  
Sbjct: 301 AAVSSANFWIMAVSAISAAVALVIGYTTARSIQ--KPLQKINHELAYMARGDMTRRINYP 358

Query: 108 VRVNQEMSKLLIEGEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 167
            R   E   L      I  + +   ++  Q N  + +   EA+R+ E          E +
Sbjct: 359 TRC--EFGAL---SRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQK 413

Query: 168 NLAVKTSQSTEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVE 227
           +   + + +  +++ + T + R+T+  ++E+ R     ++  +KV+ ++     + S +E
Sbjct: 414 SQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDME 473

Query: 228 -------MISERSDQIHQSAAEQRTAIEEISL----AIVEASEAANS 263
                   + E S+ I       R   E+ +L    A +EA+ A ++
Sbjct: 474 SAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDA 520