Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  144 bits (363), Expect = 4e-39
 Identities = 91/291 (31%), Positives = 160/291 (54%), Gaps = 6/291 (2%)

Query: 5   INQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHS 64
           + Q +++L  +V ++  +   LR +   +  +A+      D Q+     IA A TE+  S
Sbjct: 250 VQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTEMASS 309

Query: 65  VATVAQTVNETA---EQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEG 121
              VA +  +TA   +QA   ++ T  ++H   +  S+I  +  ++   +  ++ L ++ 
Sbjct: 310 ANQVADSARDTAFNTDQADQQSQHTQKLIH---NTVSNIQGLATQLQTASTAVADLDLDV 366

Query: 122 EKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIK 181
           + I  VL+VI DI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLA +T  ST++I+
Sbjct: 367 KNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQ 426

Query: 182 ANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAA 241
             I NL   +    + +       + + ++  ++ S++  + S++E +S  S QI  +AA
Sbjct: 427 QMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAA 486

Query: 242 EQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKF 292
           EQ    ++I+  I    E+ + +     ++   T+ ++ ++  + +  A F
Sbjct: 487 EQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHF 537