Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  158 bits (399), Expect = 4e-43
 Identities = 90/289 (31%), Positives = 158/289 (54%)

Query: 5   INQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHS 64
           +++ T  LR ++  + +  +++   A++     E+  A ++ QK + + +A A  ++  +
Sbjct: 349 MHRMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTAT 408

Query: 65  VATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKI 124
           V  VA+   + +E AL A +        +G A + I  + +E+V  ++ M+ L  E +KI
Sbjct: 409 VHEVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKI 468

Query: 125 TTVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANI 184
            +VL+VI  +++QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +T QSTE+I+  I
Sbjct: 469 GSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELI 528

Query: 185 TNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQR 244
             L   T  V   +     L + + E    + SS+  +  +V  I   + QI  +A EQ 
Sbjct: 529 AGLQSGTQRVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAEEQT 588

Query: 245 TAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
              EEI+ +++   + ++     + + A  +  ++ +   +   + +FR
Sbjct: 589 AVAEEINRSVMNVRDISDQTSAASEETASSSVELARLGTHLQGLVGRFR 637



 Score = 31.6 bits (70), Expect = 5e-05
 Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MTQGINQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATE 60
           + Q   Q T  +  ++  + + +  +      SR+  + +V    +    LETI    + 
Sbjct: 513 LAQRTQQSTEEIEELIAGLQSGTQRVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSS 572

Query: 61  ---LNHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKL 117
              +N  +AT A+     AE+   +     ++  +  +A+ + ++   E+ R+   +  L
Sbjct: 573 IQAMNQQIATAAEEQTAVAEEINRSVMNVRDISDQTSAASEETASSSVELARLGTHLQGL 632

Query: 118 L 118
           +
Sbjct: 633 V 633



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 51/257 (19%), Positives = 95/257 (36%), Gaps = 38/257 (14%)

Query: 45  DQQKHQLETIAAAATELNHSVATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMC 104
           D Q+  L+ I  A  EL    A V      + + A  A     + V + G+A        
Sbjct: 194 DYQQTALKAIDQALAELRALPAKVPAEHAASLDDAATAMGGYRDAVTQFGNAQLASEQAL 253

Query: 105 NEMVR---VNQEMSKLLIEGE---------KITTVLNVINDISEQTNLLALNAAI----- 147
             MV    V  + S+++   +         +  T+L V   ++    LLA  A       
Sbjct: 254 QRMVEQGTVLLQASQMMTASQTEVRDAAAAQAKTLLTVATVLALALGLLAAWAITRQIII 313

Query: 148 ---EAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANITNLNRATNTVEE-------E 197
              +  RA E+        D  ++L V+      Q++A+   ++R T  + E        
Sbjct: 314 PLRQTLRAAER----VASGDLTQSLQVQRRDELGQLQAS---MHRMTQGLRELIGGIGDG 366

Query: 198 LTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQ----IHQSAAEQRTAIEEISLA 253
           +T++    E+ +     + + + N K   + ++   +Q    +H+ A     A E   +A
Sbjct: 367 VTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVHEVARNAEQASEAALMA 426

Query: 254 IVEASEAANSVYDRAAQ 270
             +A E    V +  AQ
Sbjct: 427 DQQAREGDRVVGEAVAQ 443