Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  141 bits (356), Expect = 4e-38
 Identities = 88/292 (30%), Positives = 165/292 (56%), Gaps = 8/292 (2%)

Query: 6   NQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSV 65
           N FT  LR+++ +    +  +   A   R+ +     +I+Q++ Q++ ++ A T++  +V
Sbjct: 385 NTFTDKLRSLLKDTAANTKAVSDAADHLRDVSHATSKEINQERSQVDNVSTAVTQMAATV 444

Query: 66  ATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKIT 125
             +++   ++++ A  A  L      ++  A  +I  + + + +  + +  L  E + I 
Sbjct: 445 VEISKNAAQSSDAATKADELVQAGSEQVQDAMREIRALADAISQGVEVVGGLSKESDSIG 504

Query: 126 TVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANIT 185
            V++VIN I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +T +ST  I+  + 
Sbjct: 505 AVVDVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQESTTDIRKMVE 564

Query: 186 NL---NRATNTV-EEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAA 241
            L   +  TN+V +E  TR    ++KT + V     +++++  S+ ++ E+S  I  +  
Sbjct: 565 RLQAMSEQTNSVMQEGQTRSQSGVDKTEKVV----ETLKDITQSIGLVHEQSTHIALATE 620

Query: 242 EQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISALIAEHMAKFR 293
           +Q    ++I+ ++V  +  ++     A + A    ++SA+S  + E + +F+
Sbjct: 621 QQTEVAQDINKSLVAITGLSDKTSQHAEELAVEATQLSAVSGDLKELVGQFK 672



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 18/96 (18%), Positives = 49/96 (51%)

Query: 164 DEVRNLAVKTSQSTEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVK 223
           DE+  LA++ +  T+++++ + +    T  V +    +  +   T+++++  +S + NV 
Sbjct: 375 DEIGALAIEFNTFTDKLRSLLKDTAANTKAVSDAADHLRDVSHATSKEINQERSQVDNVS 434

Query: 224 SSVEMISERSDQIHQSAAEQRTAIEEISLAIVEASE 259
           ++V  ++    +I ++AA+   A  +    +   SE
Sbjct: 435 TAVTQMAATVVEISKNAAQSSDAATKADELVQAGSE 470