Pairwise Alignments

Query, 294 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Methyl-accepting chemotaxis protein 4 from Alteromonas macleodii MIT1002

 Score =  149 bits (375), Expect = 2e-40
 Identities = 94/265 (35%), Positives = 139/265 (52%)

Query: 6   NQFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSV 65
           NQF   L+ +V +V  AS  L   AQ  R   EE    ID Q+        A   ++ SV
Sbjct: 251 NQFMDKLQGVVRDVVEASLPLSNLAQNLRGVTEETQRTIDVQQKSATNAKRAVDTMSGSV 310

Query: 66  ATVAQTVNETAEQALNATRLTDNVVHEIGSATSDISNMCNEMVRVNQEMSKLLIEGEKIT 125
             VA +  + A  A  AT         +    + I  +   +      +++L  +  K+ 
Sbjct: 311 DGVAHSAAQAASDANEATTAAREGRQIVQQTVTSIQQLAENVRETADVIARLESDSNKVG 370

Query: 126 TVLNVINDISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAVKTSQSTEQIKANIT 185
           +VL+VI  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +T QSTE+I++ I 
Sbjct: 371 SVLDVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQSTEEIQSTIE 430

Query: 186 NLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVKSSVEMISERSDQIHQSAAEQRT 245
            L  A ++  E ++R T     + E  + + SS+  + S++  I++ ++QI  +  +QRT
Sbjct: 431 QLQNAAHSAVEVMSRGTEQATSSVETANKAGSSLETITSTIGRINQMNEQIAHNTEDQRT 490

Query: 246 AIEEISLAIVEASEAANSVYDRAAQ 270
              +I   + E  E       R+ +
Sbjct: 491 VAVDIVRHVDEIHERTEQTASRSGE 515



 Score = 42.4 bits (98), Expect = 2e-08
 Identities = 50/241 (20%), Positives = 98/241 (40%), Gaps = 17/241 (7%)

Query: 44  IDQQKHQLETIAAAATELNHSVATVAQTVNETAEQALNATRLTDN---VVHEIGSATSDI 100
           ID     L+ IA    +L   + T ++  +E  E      +  D    VV ++  A+  +
Sbjct: 214 IDDVVRSLKDIAQENGDLTVRIETKSE--DEIGELVYWFNQFMDKLQGVVRDVVEASLPL 271

Query: 101 SNMCNEMVRVNQEMSKLL-IEGEKITTVLNVINDISEQTNLLALNAAIEAARAGEQGRGF 159
           SN+   +  V +E  + + ++ +  T     ++ +S   + +A +AA  A+ A E     
Sbjct: 272 SNLAQNLRGVTEETQRTIDVQQKSATNAKRAVDTMSGSVDGVAHSAAQAASDANEA---- 327

Query: 160 AVVADEVRNLAVKTSQSTEQIKAN-------ITNLNRATNTVEEELTRMTGLLEKTAEKV 212
              A E R +  +T  S +Q+  N       I  L   +N V   L  + G+ E+T    
Sbjct: 328 TTAAREGRQIVQQTVTSIQQLAENVRETADVIARLESDSNKVGSVLDVIKGIAEQTNLLA 387

Query: 213 SHSQSSIRNVKSSVEMISERSDQIHQSAAEQRTAIEEISLAIVEASEAANSVYDRAAQNA 272
            ++              +  +D++   A+  + + EEI   I +   AA+S  +  ++  
Sbjct: 388 LNAAIEAARAGEQGRGFAVVADEVRTLASRTQQSTEEIQSTIEQLQNAAHSAVEVMSRGT 447

Query: 273 E 273
           E
Sbjct: 448 E 448



 Score = 38.9 bits (89), Expect = 3e-07
 Identities = 25/120 (20%), Positives = 51/120 (42%)

Query: 164 DEVRNLAVKTSQSTEQIKANITNLNRATNTVEEELTRMTGLLEKTAEKVSHSQSSIRNVK 223
           DE+  L    +Q  ++++  + ++  A+  +      + G+ E+T   +   Q S  N K
Sbjct: 241 DEIGELVYWFNQFMDKLQGVVRDVVEASLPLSNLAQNLRGVTEETQRTIDVQQKSATNAK 300

Query: 224 SSVEMISERSDQIHQSAAEQRTAIEEISLAIVEASEAANSVYDRAAQNAEGTKRVSAISA 283
            +V+ +S   D +  SAA+  +   E + A  E  +          Q AE  +  + + A
Sbjct: 301 RAVDTMSGSVDGVAHSAAQAASDANEATTAAREGRQIVQQTVTSIQQLAENVRETADVIA 360



 Score = 38.9 bits (89), Expect = 3e-07
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 7   QFTTTLRTIVVEVNNASSELRLQAQQSREKAEENVAQIDQQKHQLETIAAAATELNHSVA 66
           Q T  +++ + ++ NA+        +  E+A  +V   ++    LETI +    +N    
Sbjct: 420 QSTEEIQSTIEQLQNAAHSAVEVMSRGTEQATSSVETANKAGSSLETITSTIGRINQMNE 479

Query: 67  TVAQTVNETAEQALNATRLTDNV---VHEIGSATSDISNMCNEMVRVNQEMSKL 117
            +A    +    A++  R  D +     +  S + ++ +MCNE+  + Q +  +
Sbjct: 480 QIAHNTEDQRTVAVDIVRHVDEIHERTEQTASRSGELGSMCNELADLAQHLESI 533