Pairwise Alignments

Query, 243 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., lysine-arginine-ornithine-binding periplasmic protein from Alteromonas macleodii MIT1002

 Score = 75.5 bits (184), Expect = 1e-18
 Identities = 71/246 (28%), Positives = 108/246 (43%), Gaps = 12/246 (4%)

Query: 5   IATLIS--VVLCSFSAWAQTITAAQDPWPPFVMENAQQKGLSVDIVTAAFATQGYTVEFT 62
           IAT I   V + SF+     +  A   + P+   + Q  G    I+  AF   G  VEF 
Sbjct: 6   IATFILALVPMQSFAHAWMKLRIATTEYAPYTSTDMQHDGYINHIIADAFLETGVVVEFV 65

Query: 63  IMPWSRALNDVKEGKIDILPATWFTQERTAYLTYSDNYLTNQVKFIKKAGDNFE-FAGLA 121
            +PW  AL    +G+ D +    F + R +   +S+      + F   A    + +A L+
Sbjct: 66  SLPWEEALEATLKGEYDAISYGNFVRARESEFFHSNPISAESLVFYVNAEKGPDTWAELS 125

Query: 122 SLNGKKVGIVRGYGYGDEFMN--DPSFFRPESTDLKQNLQKLQAGRIDLAVEDELVAKSI 179
            L   K+G+  GY Y DE       S    EST  K NLQ L  G+ID+   DEL    +
Sbjct: 126 DLKDLKMGVTEGYLYNDELAAYIKSSSNVVESTTDKDNLQALIDGKIDVFPIDELTGWYL 185

Query: 180 IT---EAGMNLADFAFTNQAISENPLHVTSGKANPRSEELVAAFNKGLAEIKANG---TF 233
           +    ++G +  D       IS    H+   K    S+ +++ FNKGL E+  +G    F
Sbjct: 186 LQRDFDSG-DRRDVMPIKPFISTVTTHLLVPKGESDSQLILSLFNKGLEELTLDGKLTRF 244

Query: 234 DKLLAD 239
            +LL +
Sbjct: 245 KRLLKE 250