Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., peptide ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  421 bits (1081), Expect = e-122
 Identities = 229/534 (42%), Positives = 342/534 (64%), Gaps = 13/534 (2%)

Query: 1   MSPNP-LLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQL 59
           MS NP LL V +L +    +  +  AV ++SF I PGE +A+VGESGSGK+++  A + L
Sbjct: 1   MSANPVLLNVEHLKIRVGEHGPL--AVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGL 58

Query: 60  LPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEA 119
           LP   ++     + F+G +L + +   +R IRG  IGM+FQEPM SLNP +++G Q++EA
Sbjct: 59  LPLPMQVCG-GRLDFQGRDLASVSTEALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEA 117

Query: 120 IRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDIL 179
           ++ H ++   Q ++R L + + + +   +   + +PH+FSGG  QRIM+A  ++  P +L
Sbjct: 118 LKLHTDLDPPQIRERCLTMLRRIGIKAAERCLESYPHQFSGGMRQRIMLASVMLLRPALL 177

Query: 180 IADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQ 239
           IADEPTTALD   Q +V+ L+ E+    G AILFI+HDL +V   A +V+VM  G  VEQ
Sbjct: 178 IADEPTTALDCLAQLDVIELMLELTREQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQ 237

Query: 240 GSTEQLFLQPEHDYTRMLINSIP-KGSKDPVAVDAAPLLKAEDIRVKFLVKPYFISRRNQ 298
           GS E + L P+ +YTR L+ ++P +G   P+ V   PL++ + + ++      F  +R Q
Sbjct: 238 GSIEDILLAPKAEYTRQLLEALPRRGVLAPLPVSNEPLVEVDQVCIEHPGPTTFWGKR-Q 296

Query: 299 YFEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLL-PSTGQIAFKGQD-FRALSEK 356
           +   V   SL +  GETL +VG SGSGK+TLGR+L+GL+ P  G I FKG D  +A +  
Sbjct: 297 HTRVVHSASLVIAPGETLALVGGSGSGKTTLGRSLVGLIKPCAGSIRFKGVDILKAANRT 356

Query: 357 QRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLD 416
            RL      QM+FQDPY SL+PRM +GEI+ E L  H+P ++  ER +R  + L+++ L 
Sbjct: 357 HRL----QCQMIFQDPYSSLNPRMKIGEILAEPLR-HEPGLNAAERRERVTQTLKDIGLG 411

Query: 417 PNSINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRR 476
              + R+PH+ SGGQRQR+AI RAL+  P  ++ DEP SALD ++Q  ++EL + +Q + 
Sbjct: 412 EQFVERFPHQLSGGQRQRVAIGRALVRHPQLVIADEPISALDMTIQKQILELFERLQAQY 471

Query: 477 NIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAAS 530
               LFISHDLA V+ ++ RV VM +G V+E G+ E IF +PQH YT++L+AA+
Sbjct: 472 GFACLFISHDLAAVERIAHRVAVMHQGNVVEVGAREQIFDHPQHPYTRQLLAAA 525