Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  427 bits (1099), Expect = e-124
 Identities = 226/532 (42%), Positives = 338/532 (63%), Gaps = 8/532 (1%)

Query: 2   SPNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLP 61
           S  P+L V +L +      G    V ++SF+++PGE LA+VGESGSGK+++  A++QLLP
Sbjct: 8   SARPVLSVEHLKIEL--RHGARPLVHDLSFEVKPGEFLAVVGESGSGKTMAARAILQLLP 65

Query: 62  KNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIR 121
               +     I+F+GE+L  +    MR IRG  IGM+FQEPM SLNP  R+G Q+AE +R
Sbjct: 66  PGI-LQTGGRIVFDGEDLAARDPKAMRPIRGPGIGMVFQEPMVSLNPVHRIGEQMAEGLR 124

Query: 122 CHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIA 181
            H  +   + + R+L++ + V + DP+     +PHEFSGG  QRIM+A  ++ +P +LIA
Sbjct: 125 MHTQLPAAEIRARILDMLRRVQIADPERCMHAYPHEFSGGMRQRIMLASVMLLKPRLLIA 184

Query: 182 DEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGS 241
           DEPTTALD   Q EVL L+  +  + G A+L ITH+LG+V   A R +V+ KG +VE G 
Sbjct: 185 DEPTTALDTLSQREVLDLMVGLARDNGTAVLLITHNLGLVGRYAQRAIVLEKGQLVETGD 244

Query: 242 TEQLFLQPEHDYTRMLINSIPKGSKDPVAVDA--APLLKAEDIRVKFLVKPYFISRRNQY 299
              + + P+  YTR L++++P+        DA   PL++   + V F      + +R+  
Sbjct: 245 VPGILVAPKQPYTRKLVDALPRRQAAKPQGDAPRQPLVQVRSLCVSFSGARAGLFKRHAP 304

Query: 300 FEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLLPS-TGQIAFKGQDFRALSEKQR 358
              +  + L++  GE + +VG SGSGK+TLGRA++ L PS +GQI F+G+D R       
Sbjct: 305 VHVIDSLDLDIHPGEMVALVGGSGSGKTTLGRAILRLAPSQSGQILFRGEDVRTAGRAAL 364

Query: 359 LALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPN 418
              +   Q+VFQDP+ SL PRM V +I+ E L  H P +    R++R +  L+EV LD  
Sbjct: 365 HRFRLACQLVFQDPFSSLDPRMRVQDIVAEPLR-HLPSLDAAARVRRVKETLDEVGLDGL 423

Query: 419 SINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNI 478
              RYPHE SGGQRQR+AIARAL+  P+F++ DEP SALD ++Q  V+ L + +Q+    
Sbjct: 424 GA-RYPHELSGGQRQRVAIARALVRRPAFVVADEPVSALDMTIQAQVLSLFQSLQQHHGF 482

Query: 479 GYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAAS 530
             LFISHDLA V+ ++DRV+VM++G+++EQG+ +++F +P+H YT+ L+AA+
Sbjct: 483 ACLFISHDLAAVEQIADRVIVMERGRIVEQGARDAVFDDPRHAYTQALLAAT 534



 Score =  184 bits (466), Expect = 1e-50
 Identities = 114/284 (40%), Positives = 169/284 (59%), Gaps = 21/284 (7%)

Query: 5   PLLQVRNLSVSFT-------TNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALM 57
           PL+QVR+L VSF+            V  + ++  DI PGE +A+VG SGSGK+    A++
Sbjct: 280 PLVQVRSLCVSFSGARAGLFKRHAPVHVIDSLDLDIHPGEMVALVGGSGSGKTTLGRAIL 339

Query: 58  QLLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVA 117
           +L P  +       I+F GE++       + R R     ++FQ+P +SL+P MRV   VA
Sbjct: 340 RLAPSQS-----GQILFRGEDVRTAGRAALHRFRL-ACQLVFQDPFSSLDPRMRVQDIVA 393

Query: 118 EAIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPD 177
           E +R   ++      +RV E    V L D  GA  ++PHE SGGQ QR+ IA AL+  P 
Sbjct: 394 EPLRHLPSLDAAARVRRVKETLDEVGL-DGLGA--RYPHELSGGQRQRVAIARALVRRPA 450

Query: 178 ILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVV 237
            ++ADEP +ALD+T+QA+VL L + +Q + G A LFI+HDL  V+ +ADRV+VM +G +V
Sbjct: 451 FVVADEPVSALDMTIQAQVLSLFQSLQQHHGFACLFISHDLAAVEQIADRVIVMERGRIV 510

Query: 238 EQGSTEQLFLQPEHDYTRMLINSIPKGSKDPVA-VDAAPLLKAE 280
           EQG+ + +F  P H YT+ L+ + P+    P+A +D AP   +E
Sbjct: 511 EQGARDAVFDDPRHAYTQALLAATPR----PLASLDIAPAAISE 550