Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  427 bits (1099), Expect = e-124
 Identities = 236/526 (44%), Positives = 330/526 (62%), Gaps = 8/526 (1%)

Query: 6   LLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNAR 65
           LLQV  L+++      +V  +   SFDI PGE + IVGESGSGK+++  +L+ L P    
Sbjct: 9   LLQVSGLTLALADGKALVHGI---SFDIAPGEMIGIVGESGSGKTLAARSLIGLAPPAVH 65

Query: 66  IHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHRN 125
                SI+F+G+E+   +   +R++RG RIGM+FQEPMTSLNP M +G Q+ E +  H  
Sbjct: 66  -RTAGSIVFDGQEVTALSAGALRKLRGSRIGMVFQEPMTSLNPSMAIGRQLDEGLALHTT 124

Query: 126 VSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEPT 185
           +S  Q + R+LE+ + V + DP  A   +PH FSGG  QRIM+A A++  P +LIADEPT
Sbjct: 125 LSPAQRRARILEMLERVRIQDPAAALSAYPHRFSGGMRQRIMLASAMLLRPSLLIADEPT 184

Query: 186 TALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQL 245
           TALD  VQ EV+ L+ E+  + G A+L I+HDL +V    DR++VM  G +VE   T  L
Sbjct: 185 TALDAVVQREVMDLMVELTRDHGTAVLMISHDLPMVARYTDRMVVMHHGRIVESNRTAAL 244

Query: 246 FLQPEHDYTRMLINSIPKGSKDPVAVDAAPLLKAEDIRVKFLVKPYFISRRNQYFEAVKG 305
              P  DYTR L+ ++P          AAP+L+ + + + F      +S+R     A+KG
Sbjct: 245 VSAPREDYTRKLLAAMPTRGPVREIPQAAPILEVDGLVLDFPAGGGLLSKRPPK-RALKG 303

Query: 306 ISLELKQGETLGIVGESGSGKSTLGRALIGLL-PSTGQIAFKGQDFRALSEKQRLALKKD 364
           I L +  GE + +VG SGSGK+TLGRA+ GLL PS G+I F+G+     SE      +  
Sbjct: 304 IDLRIAPGEVVALVGGSGSGKTTLGRAIAGLLQPSGGRILFEGKGIARRSEGW-ARYRAQ 362

Query: 365 IQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNSINRYP 424
            QMVFQDP  SL PRMTVG  I E  L   P ++   R  R    L+EV L     +RYP
Sbjct: 363 CQMVFQDPASSLDPRMTVGASIGEA-LTGMPGLTPAARRGRILEVLQEVSLPAEVASRYP 421

Query: 425 HEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFIS 484
           HE SGGQRQR+AIARA++  P+FI+ DEP SALD +V+  ++EL  ++Q R     LFIS
Sbjct: 422 HELSGGQRQRVAIARAVVRRPAFIVADEPVSALDVTVRAQILELFAQLQSRHGFSCLFIS 481

Query: 485 HDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAAS 530
           HDLAVV+ ++DRV+VM+ G+++EQG  + +F  P H+YT++L+AA+
Sbjct: 482 HDLAVVEQIADRVIVMRHGEIVEQGPRDEVFDRPHHDYTRELLAAA 527



 Score =  188 bits (477), Expect = 5e-52
 Identities = 105/266 (39%), Positives = 163/266 (61%), Gaps = 17/266 (6%)

Query: 5   PLLQVRNLSVSFTTNDGVVD------AVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQ 58
           P+L+V  L + F    G++       A+K +   I PGE +A+VG SGSGK+    A+  
Sbjct: 274 PILEVDGLVLDFPAGGGLLSKRPPKRALKGIDLRIAPGEVVALVGGSGSGKTTLGRAIAG 333

Query: 59  LL-PKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVA 117
           LL P   RI      +FEG+ +  +++   R     +  M+FQ+P +SL+P M VG  + 
Sbjct: 334 LLQPSGGRI------LFEGKGIARRSEGWARYRA--QCQMVFQDPASSLDPRMTVGASIG 385

Query: 118 EAIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPD 177
           EA+     ++    + R+LE+ Q V LP    +  ++PHE SGGQ QR+ IA A++  P 
Sbjct: 386 EALTGMPGLTPAARRGRILEVLQEVSLPAEVAS--RYPHELSGGQRQRVAIARAVVRRPA 443

Query: 178 ILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVV 237
            ++ADEP +ALDVTV+A++L L  ++Q+  G + LFI+HDL VV+ +ADRV+VM  G++V
Sbjct: 444 FIVADEPVSALDVTVRAQILELFAQLQSRHGFSCLFISHDLAVVEQIADRVIVMRHGEIV 503

Query: 238 EQGSTEQLFLQPEHDYTRMLINSIPK 263
           EQG  +++F +P HDYTR L+ + P+
Sbjct: 504 EQGPRDEVFDRPHHDYTRELLAAAPR 529