Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  422 bits (1086), Expect = e-122
 Identities = 233/527 (44%), Positives = 337/527 (63%), Gaps = 8/527 (1%)

Query: 5   PLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNA 64
           PL+ V  L+++     G  + V+NVSFDI PGE + IVGESGSGK+ +  A+M L P   
Sbjct: 10  PLVSVEGLTLA--VGMGGREIVRNVSFDIAPGEMVGIVGESGSGKTQAARAIMGLTPPPL 67

Query: 65  RIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHR 124
            +     I+FEGE+L      ++R +RG R+GM+FQEPMTSLNP M +G Q+ EA+  HR
Sbjct: 68  -VRTAGRILFEGEDLTQAKPARLRELRGARVGMVFQEPMTSLNPSMTIGKQLVEALALHR 126

Query: 125 -NVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADE 183
            ++S    ++R+L++   V + DPKGA   +PHEFSGG  QR+M+A  ++ EP +LIADE
Sbjct: 127 RDLSPAARRERILDMLARVGIRDPKGALDAWPHEFSGGMRQRMMLASVMLLEPALLIADE 186

Query: 184 PTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTE 243
           PTTALD  VQ +VL L+  +      A+L I+HDL +V     R++VM  G+V+E G T+
Sbjct: 187 PTTALDAVVQRDVLELMVGLTREHRTAVLMISHDLPMVARFTQRMVVMRHGEVMETGRTD 246

Query: 244 QLFLQPEHDYTRMLINSIPKGSKDPVAVDAAPLLKAEDIRVKFLVKPYFISRRNQYFEAV 303
            +  QP H YTR L+ ++P         D AP+++  ++ V +       ++      A+
Sbjct: 247 DMLEQPRHAYTRELLQAMPHRLPARQVPDEAPVVEVRNLVVDYAGHRRLFAKTVPK-RAL 305

Query: 304 KGISLELKQGETLGIVGESGSGKSTLGRALIGLL-PSTGQIAFKGQDFRALSEKQRLALK 362
            GI L ++  E + +VG SGSGK+TLGR + GLL PS G+I F+G+     S+      +
Sbjct: 306 HGIDLVVRPREVVAVVGGSGSGKTTLGRTIAGLLQPSGGEIMFRGRPILR-SDAGWSDYR 364

Query: 363 KDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNSINR 422
              QMVFQDPY SL PRMT+G+++ EGL + +  +S  +R +R +  LEEV L      R
Sbjct: 365 LQCQMVFQDPYASLDPRMTIGQLVGEGLRLVKG-MSTADRARRVQEVLEEVGLGTGFAPR 423

Query: 423 YPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLF 482
           Y HE SGGQRQR+AIARA++  P+F++ DEP SALD +V+  V+ L  E+QKR     LF
Sbjct: 424 YAHELSGGQRQRVAIARAIVRRPAFVIADEPVSALDVTVRAQVLALFAELQKRHGFSCLF 483

Query: 483 ISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAA 529
           ISHDL VV+ ++DRV+VMQ G+++EQGS +++F  P  +YT+KL++A
Sbjct: 484 ISHDLGVVEQVADRVVVMQDGRIVEQGSRDTVFDAPTQDYTRKLLSA 530



 Score =  174 bits (442), Expect = 6e-48
 Identities = 107/264 (40%), Positives = 155/264 (58%), Gaps = 15/264 (5%)

Query: 5   PLLQVRNLSVSFTTNDGVVD------AVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQ 58
           P+++VRNL V +  +  +        A+  +   +RP E +A+VG SGSGK+     +  
Sbjct: 278 PVVEVRNLVVDYAGHRRLFAKTVPKRALHGIDLVVRPREVVAVVGGSGSGKTTLGRTIAG 337

Query: 59  LLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAE 118
           LL  +        IMF G  +L ++D      R  +  M+FQ+P  SL+P M +G  V E
Sbjct: 338 LLQPSG-----GEIMFRGRPIL-RSDAGWSDYRL-QCQMVFQDPYASLDPRMTIGQLVGE 390

Query: 119 AIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDI 178
            +R  + +S     +RV E+ + V L    G   ++ HE SGGQ QR+ IA A++  P  
Sbjct: 391 GLRLVKGMSTADRARRVQEVLEEVGLGT--GFAPRYAHELSGGQRQRVAIARAIVRRPAF 448

Query: 179 LIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVE 238
           +IADEP +ALDVTV+A+VL L  E+Q   G + LFI+HDLGVV+ VADRV+VM  G +VE
Sbjct: 449 VIADEPVSALDVTVRAQVLALFAELQKRHGFSCLFISHDLGVVEQVADRVVVMQDGRIVE 508

Query: 239 QGSTEQLFLQPEHDYTRMLINSIP 262
           QGS + +F  P  DYTR L+++IP
Sbjct: 509 QGSRDTVFDAPTQDYTRKLLSAIP 532