Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., ATPase components of various ABC-type transport systems, contain duplicated ATPase from Enterobacter asburiae PDN3

 Score =  451 bits (1161), Expect = e-131
 Identities = 256/556 (46%), Positives = 347/556 (62%), Gaps = 33/556 (5%)

Query: 6   LLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNA- 64
           +L V  L+++F      + AV+N+SF +R GETLAIVGESGSGKSV+  ALM+LL +   
Sbjct: 12  VLAVHQLNIAFQEERQFIPAVQNLSFTLRRGETLAIVGESGSGKSVTALALMRLLEQTGG 71

Query: 65  RIHPESSIMFEGE----ELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAI 120
           +I  E  ++        +L   + +QM+ +RG  I MIFQEPMTSLNP   VG Q+AE+I
Sbjct: 72  QISSEKMLLRRRNRQVIDLNELSGSQMQGVRGADIAMIFQEPMTSLNPVFPVGEQIAESI 131

Query: 121 RCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILI 180
           R H+ +S ++A      + +LV +P+ +    ++PH+ SGG  QR+MIAMAL   P +LI
Sbjct: 132 RLHQGLSGDEALNEARRMLELVRIPEAQAILGRYPHQLSGGMRQRVMIAMALSCRPAVLI 191

Query: 181 ADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQG 240
           ADEPTTALDVT+QA++L+LIK +Q  M M ++FITHD+GVV  +ADRVLVM KG  VE G
Sbjct: 192 ADEPTTALDVTIQAQILQLIKVLQQEMEMGVIFITHDMGVVADIADRVLVMHKGSAVETG 251

Query: 241 STEQLFLQPEHDYTRMLINSIPK-----GSKDP---------------------VAVDAA 274
             EQ+F  P H YT+ L+ ++P+     GS  P                       V   
Sbjct: 252 PVEQIFHAPVHPYTKALLAAVPRLGAMNGSDLPRRFPLISLEASEQQEDEREQDTVVPGK 311

Query: 275 PLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALI 334
           P+L+  D+  +F ++   ++R  +   AV+ +S +L  GETL +VGESG GKST GRAL+
Sbjct: 312 PILEVRDLVTRFPLRSGVLNRVKREVHAVENVSFDLWPGETLALVGESGCGKSTTGRALL 371

Query: 335 GLLPS-TGQIAFKGQDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVH 393
            L+ S  G I F G+    L + +  A+++DIQ +FQDPY SL PR TVG  I E L VH
Sbjct: 372 RLVESQEGSITFNGERIDTLPDSRLQAVRRDIQFIFQDPYASLDPRHTVGYSIMEPLRVH 431

Query: 394 QPHISKLERMQRARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDEP 453
              +      +R    LE V L P    RYPHEFSGGQRQRI IARAL L P  ++ DE 
Sbjct: 432 N-LLDGEAAQRRVAWLLERVGLKPEHAWRYPHEFSGGQRQRICIARALALNPKVVIADES 490

Query: 454 TSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAES 513
            SALD S++  +I LL ++Q+   I +LFISHD+AVV+ +S RV VM  GQ++E G   +
Sbjct: 491 VSALDVSIRAQIINLLLDLQRDMGIAFLFISHDMAVVERISHRVAVMFMGQIVEIGPRRA 550

Query: 514 IFHNPQHEYTKKLIAA 529
           +F NPQH YT+KLIAA
Sbjct: 551 VFENPQHPYTRKLIAA 566



 Score =  205 bits (522), Expect = 4e-57
 Identities = 117/265 (44%), Positives = 169/265 (63%), Gaps = 15/265 (5%)

Query: 5   PLLQVRNLSVSFTTNDGV-------VDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALM 57
           P+L+VR+L   F    GV       V AV+NVSFD+ PGETLA+VGESG GKS +  AL+
Sbjct: 312 PILEVRDLVTRFPLRSGVLNRVKREVHAVENVSFDLWPGETLALVGESGCGKSTTGRALL 371

Query: 58  QLLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVA 117
           +L+        E SI F GE +    D++++ +R D I  IFQ+P  SL+P   VG  + 
Sbjct: 372 RLVESQ-----EGSITFNGERIDTLPDSRLQAVRRD-IQFIFQDPYASLDPRHTVGYSIM 425

Query: 118 EAIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPD 177
           E +R H  +    A++RV  L + V L  P+ A+ ++PHEFSGGQ QRI IA AL   P 
Sbjct: 426 EPLRVHNLLDGEAAQRRVAWLLERVGLK-PEHAW-RYPHEFSGGQRQRICIARALALNPK 483

Query: 178 ILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVV 237
           ++IADE  +ALDV+++A+++ L+ ++Q +MG+A LFI+HD+ VV+ ++ RV VM  G +V
Sbjct: 484 VVIADESVSALDVSIRAQIINLLLDLQRDMGIAFLFISHDMAVVERISHRVAVMFMGQIV 543

Query: 238 EQGSTEQLFLQPEHDYTRMLINSIP 262
           E G    +F  P+H YTR LI ++P
Sbjct: 544 EIGPRRAVFENPQHPYTRKLIAAVP 568