Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 555 a.a., ABC transporter, nucleotide binding/ATPase protein (peptide) from Agrobacterium fabrum C58

 Score =  444 bits (1143), Expect = e-129
 Identities = 254/561 (45%), Positives = 350/561 (62%), Gaps = 45/561 (8%)

Query: 5   PLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNA 64
           PLL VR+LSV + +  G   AV+N+SFDI  GE +A+VGESG GKS +  AL  LLP  A
Sbjct: 4   PLLGVRDLSVRYHSRSGEAVAVENLSFDIAAGEAVALVGESGCGKSTTALALSNLLPDEA 63

Query: 65  RIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHR 124
               E  + F+G +L        R I G RIGMIFQEPM++LNP   VG Q+AE +  H 
Sbjct: 64  SSSGE--VTFDGLDLFRLPPKAWRPILGPRIGMIFQEPMSALNPVYTVGDQIAEVLHAHE 121

Query: 125 NVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEP 184
            +S+  A+ RVLEL  LV +P+P      +PHE SGGQ QR MIA A+   P +LIADEP
Sbjct: 122 RLSRKAARSRVLELLDLVSMPEPHRRIASYPHELSGGQRQRAMIAQAIALTPLLLIADEP 181

Query: 185 TTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQ 244
           TTALD T+Q+++L LI  ++ ++ M +L I+HDL +V    DRV+VM  G  +E+   E 
Sbjct: 182 TTALDSTIQSQILELIDRLRRDLSMGLLLISHDLTLVSRWTDRVVVMHNGKRMEELKAEH 241

Query: 245 LFLQPEHDYTRMLIN-SIPKGS---------------------------KDPVAVD---- 272
           LF + +H YT+ LI  SI  G                              PVA +    
Sbjct: 242 LFQESQHPYTKGLIGASIRLGDGRHASSERLNEIRTHRNSNGTTSFEIRSPPVAAEPRTN 301

Query: 273 --AAPLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLG 330
             A  LL+ ED+ V++          ++   AV  ++ EL +GETLG+VGESGSGKS+L 
Sbjct: 302 ATADALLEVEDLTVRY-------DPASKTPPAVDRVTFELLRGETLGLVGESGSGKSSLS 354

Query: 331 RALIGLLP-STGQIAFKGQDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEG 389
           +AL  L+P + GQI F+GQD          A +  +QM+FQDPY SL+PR TVG+I+   
Sbjct: 355 KALSRLIPVAGGQILFEGQDITHAGGADLRAFRGRVQMIFQDPYSSLNPRRTVGDILDSV 414

Query: 390 LLVHQPHISKLERMQRARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFIL 449
           L  H+ + +  +R  R   AL++VRL  +++ R+PHEFSGGQRQRIAIARALI+ PS ++
Sbjct: 415 LHAHK-YRNSADRQSRISEALDQVRLPRSAVERFPHEFSGGQRQRIAIARALIVRPSLVI 473

Query: 450 LDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQG 509
            DEP SALD SVQ  ++ LL ++++   + YLFISHDLAVVK +SDR++VM+ G ++E+G
Sbjct: 474 CDEPVSALDVSVQAQILNLLADLKEEAGLSYLFISHDLAVVKYISDRIMVMKDGHIIERG 533

Query: 510 SAESIFHNPQHEYTKKLIAAS 530
           + ++++ NP HEYT+KLIAA+
Sbjct: 534 NHQNLWSNPSHEYTRKLIAAA 554



 Score =  177 bits (448), Expect = 1e-48
 Identities = 111/268 (41%), Positives = 156/268 (58%), Gaps = 21/268 (7%)

Query: 273 AAPLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRA 332
           A PLL   D+ V++         R+    AV+ +S ++  GE + +VGESG GKST   A
Sbjct: 2   AIPLLGVRDLSVRY-------HSRSGEAVAVENLSFDIAAGEAVALVGESGCGKSTTALA 54

Query: 333 LIGLLP----STGQIAFKGQD-FRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIIT 387
           L  LLP    S+G++ F G D FR   +  R  L   I M+FQ+P  +L+P  TVG+ I 
Sbjct: 55  LSNLLPDEASSSGEVTFDGLDLFRLPPKAWRPILGPRIGMIFQEPMSALNPVYTVGDQIA 114

Query: 388 EGLLVHQPHISKLERMQRARRALEEVRL----DPNS-INRYPHEFSGGQRQRIAIARALI 442
           E L  H+    +L R     R LE + L    +P+  I  YPHE SGGQRQR  IA+A+ 
Sbjct: 115 EVLHAHE----RLSRKAARSRVLELLDLVSMPEPHRRIASYPHELSGGQRQRAMIAQAIA 170

Query: 443 LEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQK 502
           L P  ++ DEPT+ALD ++Q  ++EL+  +++  ++G L ISHDL +V   +DRV+VM  
Sbjct: 171 LTPLLLIADEPTTALDSTIQSQILELIDRLRRDLSMGLLLISHDLTLVSRWTDRVVVMHN 230

Query: 503 GQVMEQGSAESIFHNPQHEYTKKLIAAS 530
           G+ ME+  AE +F   QH YTK LI AS
Sbjct: 231 GKRMEELKAEHLFQESQHPYTKGLIGAS 258