Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  475 bits (1223), Expect = e-138
 Identities = 253/557 (45%), Positives = 364/557 (65%), Gaps = 30/557 (5%)

Query: 1   MSPNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLL 60
           M   P+L VRNL+ SF  +      V++VSFD++ GET+AIVGESGSGKSV++ +LM+LL
Sbjct: 1   METKPVLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLL 60

Query: 61  PKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAI 120
              A  H E  ++  G  LL  ++ +MR +RG+ I MIFQEPMTSLNP   +G Q++E +
Sbjct: 61  AP-ASSHIEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVL 119

Query: 121 RCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILI 180
             H+ +S+ +A+   + L + V +P+    + ++PH+FSGG  QR+MIAMAL + P +LI
Sbjct: 120 IRHKGLSKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLI 179

Query: 181 ADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQG 240
           ADEPTTALDVT+Q ++L LIK +Q   GM++LFITHD+GVV  +ADR +VM +GD VE G
Sbjct: 180 ADEPTTALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETG 239

Query: 241 STEQLFLQPEHDYTRMLINSIPK-GS--------------------------KDPVAVDA 273
           +TE +F + +H YTR L++++PK GS                           + VA   
Sbjct: 240 ATEDIFRRGQHPYTRALLSAVPKLGSMHDRQWPTRFPVLDLKTGLSTEPQEVAETVACGQ 299

Query: 274 APLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRAL 333
            P+L  +++  +F ++    +R+     AV+ +S +L QGETL +VGESG GKST GR++
Sbjct: 300 TPVLSVKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSI 359

Query: 334 IGLL-PSTGQIAFKGQDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLV 392
           + L+ PS+G ++  G D   L       ++K +QM+FQDP+ SL+PRMTVG  I+E  + 
Sbjct: 360 MRLVEPSSGDVSLDGYDVMRLDTVGLRNMRKSVQMIFQDPFSSLNPRMTVGTAISEPFIK 419

Query: 393 HQPHISKLERMQRARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDE 452
           H+   +K +  ++    LE+V L  +  NRYPHEFSGGQRQRIAIARAL L+P  I+ DE
Sbjct: 420 HRLGSTK-QAKEKTADLLEKVGLSADMANRYPHEFSGGQRQRIAIARALALDPKVIVADE 478

Query: 453 PTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAE 512
             SALD S++  V  LL ++Q+  N+ +LFISHD+AVV+ +S RV VM  G+++E G   
Sbjct: 479 SVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRA 538

Query: 513 SIFHNPQHEYTKKLIAA 529
           ++F NPQH YTKKL+AA
Sbjct: 539 AVFDNPQHPYTKKLMAA 555



 Score =  190 bits (482), Expect = 2e-52
 Identities = 105/265 (39%), Positives = 164/265 (61%), Gaps = 15/265 (5%)

Query: 5   PLLQVRNLSVSFTTNDGV-------VDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALM 57
           P+L V+NL   F    G+       V AV+NVSFD+  GETL++VGESG GKS +  ++M
Sbjct: 301 PVLSVKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIM 360

Query: 58  QLLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVA 117
           +L+  ++       +  +G +++      +R +R   + MIFQ+P +SLNP M VG  ++
Sbjct: 361 RLVEPSS-----GDVSLDGYDVMRLDTVGLRNMRKS-VQMIFQDPFSSLNPRMTVGTAIS 414

Query: 118 EAIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPD 177
           E    HR  S  QAK++  +L + V L        ++PHEFSGGQ QRI IA AL  +P 
Sbjct: 415 EPFIKHRLGSTKQAKEKTADLLEKVGLSADMA--NRYPHEFSGGQRQRIAIARALALDPK 472

Query: 178 ILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVV 237
           +++ADE  +ALDV+++A+V  L+ ++Q ++ +A LFI+HD+ VV+ V+ RV VM  G++V
Sbjct: 473 VIVADESVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIV 532

Query: 238 EQGSTEQLFLQPEHDYTRMLINSIP 262
           E G    +F  P+H YT+ L+ ++P
Sbjct: 533 EIGPRAAVFDNPQHPYTKKLMAAVP 557