Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  526 bits (1354), Expect = e-153
 Identities = 264/532 (49%), Positives = 381/532 (71%), Gaps = 2/532 (0%)

Query: 4   NPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKN 63
           N ++  RN++V+F    G V+AVK++SF +  GET+AIVGESGSGKSV+   +M LL K 
Sbjct: 23  NAIIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKR 82

Query: 64  ARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCH 123
           A +   +++ F G+++L  +  Q R +RG+RI MIFQEPM+SLNP   +G Q+ EAIR H
Sbjct: 83  ASVSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRVH 142

Query: 124 RNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADE 183
             +S+ +A+ R L+L + V +P+P+   +++PH+ SGGQ QR+MIAMAL N+PD+LIADE
Sbjct: 143 SRLSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIADE 202

Query: 184 PTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTE 243
           PTTALDVTVQA++L LI+++Q   GMA++ ITHDL +VK  +D V VM  G++ E  +TE
Sbjct: 203 PTTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTTE 262

Query: 244 QLFLQPEHDYTRMLINSIPKGSKDPVAVDAAPLLKAEDIRVKFLVKPYFISRRN-QYFEA 302
           +LF  P+H YT+ L+ S P+G+  P+  ++  LL A  +RV F+++   + +   +   A
Sbjct: 263 RLFAAPQHPYTKRLLASEPRGTAKPLPENSGVLLTASGVRVSFMMRYGGLFKPELKELIA 322

Query: 303 VKGISLELKQGETLGIVGESGSGKSTLGRALIGL-LPSTGQIAFKGQDFRALSEKQRLAL 361
           V  + L LK+ ETLG+VGESGSGK+T G++L+ L  P  G++ F G+     S  +   L
Sbjct: 323 VDSLGLTLKRHETLGLVGESGSGKTTFGQSLLRLNEPVGGEVIFDGERVDGRSRSEMRPL 382

Query: 362 KKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNSIN 421
           +  +Q+VFQDP+ SL+PRMT+G+II EGL+++    +K ER++R R ALE   +  N ++
Sbjct: 383 RSRMQIVFQDPFASLNPRMTIGQIIEEGLIINGLGRTKAERLERVRDALEAAGMPGNILS 442

Query: 422 RYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYL 481
           R+PHEFSGGQRQRIAIARA+ LEP FILLDEPTSALD SVQ  +I+LL+++Q  R + YL
Sbjct: 443 RFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIDLLRKLQDERGLSYL 502

Query: 482 FISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAASFDI 533
           FISHDL VV+AL  RV+VMQ G+++E+G  E +  NP+ EYT++L+ A+F+I
Sbjct: 503 FISHDLKVVRALCHRVIVMQGGRIVEEGPVEDVLTNPKTEYTQRLVRAAFEI 554