Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  452 bits (1164), Expect = e-131
 Identities = 238/556 (42%), Positives = 341/556 (61%), Gaps = 34/556 (6%)

Query: 4   NPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKN 63
           N LL V  LSV F    G    V ++SF + PG T+A+VGESGSGKSV++ + M+L    
Sbjct: 7   NALLSVEGLSVEF----GDSRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMM 62

Query: 64  ARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCH 123
              +P   I+FEG++LL  +  +MR IRG  I MIFQEPMTSLNP   +G Q+ E +  H
Sbjct: 63  GATYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLH 122

Query: 124 RNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADE 183
             + +  A ++  +L  +V LPD      ++PH+ SGG  QR+MIAMAL   P +LIADE
Sbjct: 123 EKLGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADE 182

Query: 184 PTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTE 243
           PTTALDVT+QA++L +++++Q  +GM ++FITHD+GVV  +AD V+VM KG  VE+G  +
Sbjct: 183 PTTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVK 242

Query: 244 QLFLQPEHDYTRMLINSIPK-GS----------------------------KDPVAVDAA 274
            +F  P+H YTR L++++P+ GS                            +D    D  
Sbjct: 243 DIFANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQK 302

Query: 275 PLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALI 334
           PLL  +D+ V+F ++     +      AV+ +S ++  GETL +VGESGSGKST+GR + 
Sbjct: 303 PLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQ 362

Query: 335 GLLPS-TGQIAFKGQDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVH 393
            L  + +G+IAF G+ +  +S  +R  +++++Q +FQDP+ SL PR TVG  I E +  H
Sbjct: 363 QLQTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTH 422

Query: 394 QPHISKLERMQRARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDEP 453
                +    +R    LE V L      RYPHEFSGGQRQR+ IARAL  +P  I+ DE 
Sbjct: 423 GLINDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEA 482

Query: 454 TSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAES 513
            SALD S+Q  +I L  ++Q  R + YLFISHD+AVV+ +S RV V+  GQ+ME GS + 
Sbjct: 483 LSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQ 542

Query: 514 IFHNPQHEYTKKLIAA 529
           +F  P H+YT++L++A
Sbjct: 543 VFETPTHDYTRRLLSA 558



 Score =  191 bits (485), Expect = 7e-53
 Identities = 110/266 (41%), Positives = 162/266 (60%), Gaps = 16/266 (6%)

Query: 5   PLLQVRNLSVSFTTNDGV-------VDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALM 57
           PLL V++L V F     +       + AV+ VSFDI  GETLA+VGESGSGKS     + 
Sbjct: 303 PLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQ 362

Query: 58  QLLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVA 117
           QL     +      I F G      +  +  R+R + +  IFQ+P  SL+P   VG  +A
Sbjct: 363 QL-----QTAVSGEIAFNGRSYSQMSAAERFRMRQE-VQYIFQDPFASLDPRKTVGFSIA 416

Query: 118 EAIRCHRNVSQNQA-KQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEP 176
           E I  H  ++  +A ++RV EL + V L     A  ++PHEFSGGQ QR+ IA AL ++P
Sbjct: 417 EPINTHGLINDQKAVRRRVDELLERVGLSSEHAA--RYPHEFSGGQRQRVCIARALASDP 474

Query: 177 DILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDV 236
            ++IADE  +ALDV++QA+++ L  ++QA  G+A LFI+HD+ VV+ ++ RV V+  G +
Sbjct: 475 KLIIADEALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQI 534

Query: 237 VEQGSTEQLFLQPEHDYTRMLINSIP 262
           +E GS +Q+F  P HDYTR L++++P
Sbjct: 535 MELGSRQQVFETPTHDYTRRLLSAVP 560