Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  483 bits (1242), Expect = e-140
 Identities = 254/557 (45%), Positives = 369/557 (66%), Gaps = 32/557 (5%)

Query: 2   SPNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLP 61
           S +P+L V+NL+ SF  + G    V+N+SFDI P ET+AIVGESGSGKSV++ ++M+LL 
Sbjct: 14  SVSPVLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLD 73

Query: 62  -KNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAI 120
            K +RI  E  +M  G +LL   + +MR++RG  I MIFQEPMTSLNP   +G Q+AEA+
Sbjct: 74  RKTSRI--EGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEAL 131

Query: 121 RCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILI 180
             H+++S + AK  V+ L + V +P+    +  +PH+FSGG  QR+MIAMAL ++P +LI
Sbjct: 132 TVHQDISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLI 191

Query: 181 ADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQG 240
           ADEPTTALDVT+Q ++L LIK++Q   GM++LFITHD+GVV  VADR +VM +GDVVE G
Sbjct: 192 ADEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETG 251

Query: 241 STEQLFLQPEHDYTRMLINSIPK---------------------------GSKDPVAVDA 273
           +T+ +F + +H YTR L++++PK                            +KD V+   
Sbjct: 252 TTDDIFHRGQHPYTRALLSAVPKLGSMRSRLLPARFPIIDIKTGESPPVVETKDTVSGGK 311

Query: 274 APLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRAL 333
            P+L  +D+  +F ++     R++    AV+ +S +L +GETL +VGESG GKST GR++
Sbjct: 312 TPILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSI 371

Query: 334 IGLL-PSTGQIAFKGQDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLV 392
             L+ P++G +   G +   L       +++ +QMVFQDP+ SL PRM+VG  I E  + 
Sbjct: 372 TRLIEPTSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFME 431

Query: 393 HQPHISKLERMQRARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDE 452
           H+    K +  ++A   LE+V L P+ + R+PHEFSGGQRQRIAIAR+L+L+P  I+ DE
Sbjct: 432 HRLG-QKAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADE 490

Query: 453 PTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAE 512
             SALD S++  V  LL ++Q+  N+ +LFISHD+AVV+ +S RV VM  G+++E G   
Sbjct: 491 AVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRA 550

Query: 513 SIFHNPQHEYTKKLIAA 529
           ++F NPQH YTKKL++A
Sbjct: 551 AVFDNPQHPYTKKLMSA 567



 Score =  187 bits (475), Expect = 1e-51
 Identities = 103/266 (38%), Positives = 167/266 (62%), Gaps = 17/266 (6%)

Query: 5   PLLQVRNLSVSFTTNDGV-------VDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALM 57
           P+L V++L+  F    G+       V AV+ VSFD+  GETL++VGESG GKS +  ++ 
Sbjct: 313 PILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSIT 372

Query: 58  QLLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVA 117
           +L+   +      ++  +G E+L    T +R +R   + M+FQ+P  SL+P M VG  + 
Sbjct: 373 RLIEPTS-----GNVTLDGYEVLKLDRTTLRTMRRS-VQMVFQDPFASLDPRMSVGTAIM 426

Query: 118 EAIRCHRNVSQNQAKQRVLELFQLVHL-PDPKGAYQKFPHEFSGGQLQRIMIAMALINEP 176
           E    HR   + QA+++  +L + V L PD     ++FPHEFSGGQ QRI IA +L+ +P
Sbjct: 427 EPFMEHRLGQKAQAREKAADLLEKVGLSPD---MMKRFPHEFSGGQRQRIAIARSLMLDP 483

Query: 177 DILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDV 236
            +++ADE  +ALDV+++A+V  L+ ++Q ++ +A LFI+HD+ VV+ V+ RV VM  G++
Sbjct: 484 KVIVADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEI 543

Query: 237 VEQGSTEQLFLQPEHDYTRMLINSIP 262
           VE G    +F  P+H YT+ L++++P
Sbjct: 544 VEIGPRAAVFDNPQHPYTKKLMSAVP 569