Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 611 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  466 bits (1199), Expect = e-135
 Identities = 246/552 (44%), Positives = 357/552 (64%), Gaps = 30/552 (5%)

Query: 6   LLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNAR 65
           +L VRNL+ SF  + G    V+++SFD+ PGET+AIVGESGSGKSV++ ++M+LL + + 
Sbjct: 15  VLSVRNLTTSFHVDGGWKPVVRDISFDVGPGETVAIVGESGSGKSVTSLSIMRLLDRESS 74

Query: 66  IHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHRN 125
              +  I+  G  LL+ ++  MRR+RG+ + MIFQEPMTSLNP   +G Q++EA+ CH+ 
Sbjct: 75  -RVQGEILLGGRNLLSLSEDAMRRVRGNEVAMIFQEPMTSLNPLFTIGDQISEALLCHQP 133

Query: 126 VSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEPT 185
           +S+ +A+   + L + V +P     + ++PH FSGG  QR+MIAMAL ++P +LIADEPT
Sbjct: 134 MSKAEARAETVRLLEKVRIPSAASRFDEYPHRFSGGMRQRVMIAMALASKPKLLIADEPT 193

Query: 186 TALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQL 245
           TALDVT+Q ++L LIK +Q   G ++LFITHD+GVV  +ADR +VM +G+ VE G+T  +
Sbjct: 194 TALDVTIQGQILDLIKTLQEEEGTSVLFITHDMGVVAEIADRTVVMYRGEQVEVGATADI 253

Query: 246 FLQPEHDYTRMLINSIP-----KGSK----------------------DPVAVDAAPLLK 278
           F + +H YTR L++++P     KG +                      D V   A P+LK
Sbjct: 254 FHRGKHPYTRALLSAVPVLGSMKGEERPLRFPIVNTATGETQEPVRPADTVDASAQPVLK 313

Query: 279 AEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLL- 337
            E +  +F +    + R +    AV+ +S +L+ GETL +VGESG GKST GRA++ L+ 
Sbjct: 314 VEGLTKRFDIHSGLLGRLSGRVHAVENVSFDLRAGETLSLVGESGCGKSTTGRAIMRLIE 373

Query: 338 PSTGQIAFKGQDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHI 397
           P  G +   G++   L +     ++K +QM+FQDP+ SL+PRMTVG  I E  L H+   
Sbjct: 374 PDAGSVVVNGENILTLDKSGMREMRKTVQMIFQDPFASLNPRMTVGAAIAEPFLEHRMG- 432

Query: 398 SKLERMQRARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSAL 457
           S  E  +     L +V L P+   RYPHEFSGGQRQRI IARAL L+P  I+ DE  SAL
Sbjct: 433 SAREAKEVVADMLNKVGLSPDMAARYPHEFSGGQRQRICIARALALQPKVIVADESVSAL 492

Query: 458 DRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHN 517
           D S++  VI L+ ++Q+  ++ +LFISHD+AVV+ +S RV VM  G+++E G    +F N
Sbjct: 493 DVSIKAQVINLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRADVFDN 552

Query: 518 PQHEYTKKLIAA 529
           PQH+YT+KL+AA
Sbjct: 553 PQHDYTRKLMAA 564



 Score =  206 bits (523), Expect = 3e-57
 Identities = 116/273 (42%), Positives = 171/273 (62%), Gaps = 15/273 (5%)

Query: 2   SPNPLLQVRNLSVSFTTNDGV-------VDAVKNVSFDIRPGETLAIVGESGSGKSVSTN 54
           S  P+L+V  L+  F  + G+       V AV+NVSFD+R GETL++VGESG GKS +  
Sbjct: 307 SAQPVLKVEGLTKRFDIHSGLLGRLSGRVHAVENVSFDLRAGETLSLVGESGCGKSTTGR 366

Query: 55  ALMQLLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGV 114
           A+M+L+  +A      S++  GE +L    + MR +R   + MIFQ+P  SLNP M VG 
Sbjct: 367 AIMRLIEPDA-----GSVVVNGENILTLDKSGMREMR-KTVQMIFQDPFASLNPRMTVGA 420

Query: 115 QVAEAIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALIN 174
            +AE    HR  S  +AK+ V ++   V L     A  ++PHEFSGGQ QRI IA AL  
Sbjct: 421 AIAEPFLEHRMGSAREAKEVVADMLNKVGLSPDMAA--RYPHEFSGGQRQRICIARALAL 478

Query: 175 EPDILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKG 234
           +P +++ADE  +ALDV+++A+V+ L+ ++Q ++ +A LFI+HD+ VV+ V+ RV VM  G
Sbjct: 479 QPKVIVADESVSALDVSIKAQVINLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLG 538

Query: 235 DVVEQGSTEQLFLQPEHDYTRMLINSIPKGSKD 267
           ++VE G    +F  P+HDYTR L+ ++P    D
Sbjct: 539 EIVEIGPRADVFDNPQHDYTRKLMAAVPVPDPD 571