Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., peptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  444 bits (1143), Expect = e-129
 Identities = 243/531 (45%), Positives = 345/531 (64%), Gaps = 7/531 (1%)

Query: 2   SPNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLP 61
           S + +L VRNL+V          AVK++SFD+  GE L I+GESGSGKSV+ + +M LL 
Sbjct: 7   SADVVLSVRNLTVDLPRGMERSHAVKDISFDLHAGEILCIIGESGSGKSVTASTIMGLLS 66

Query: 62  KNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIR 121
               +     I F+G ++L   + ++R +RG  + +IFQ+P+++LNP M VG QVAE + 
Sbjct: 67  PVITVS-SGEIQFKGMDILAAKEEKIRPLRGQAVSIIFQDPLSALNPLMTVGDQVAEVLE 125

Query: 122 CHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIA 181
            H   ++     +VLEL + V LPDP     ++P   SGGQ QR+MIAMAL  +PD+LIA
Sbjct: 126 AHGVGTRETRNAKVLELLEEVGLPDPLLMRLQYPFRLSGGQRQRVMIAMALALDPDVLIA 185

Query: 182 DEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGS 241
           DEPTTALDVT QA++L LI++IQ    M+++FITHD GVV  +ADRV+VM KG +VEQG 
Sbjct: 186 DEPTTALDVTTQAQILELIRKIQKRKNMSVMFITHDFGVVAEIADRVVVMEKGYLVEQGR 245

Query: 242 TEQLFLQPEHDYTRMLINSIPKGSKDPVAVD--AAPLLKAEDIRVKFLVKPYFISRRNQY 299
            +Q+ + P H YT+ L+ ++P+      ++D     +L+ E++  ++     F  R+ + 
Sbjct: 246 ADQVLINPVHPYTQRLVAAVPRMRSVERSIDEEVPVVLEVENLEKEYRSSGSFF-RKART 304

Query: 300 FEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLL-PSTGQIAFKGQDFRALSEKQR 358
            +AV  +S +L++G+TLG+VGESGSGKS+LGR L+ LL P  G I F G+D   + E   
Sbjct: 305 VKAVNNVSFKLRKGQTLGVVGESGSGKSSLGRVLLKLLDPDGGAIRFDGRDIATMDESAF 364

Query: 359 LALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPN 418
            AL+  IQM+FQDP+ SL+PR T+G+I+T G L H   ++  E   +A   L+ V LD  
Sbjct: 365 RALRPYIQMIFQDPFASLNPRHTIGKILTVGPLAH--GMALHEARTKALGILKLVGLDEQ 422

Query: 419 SINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNI 478
           + +R+PHEFSGGQRQRI IARAL+ +P  ++ DE  SALD S+Q  V+ELL  +Q+   +
Sbjct: 423 AYDRFPHEFSGGQRQRIGIARALMFDPVVLVADEAVSALDVSIQAQVLELLARVQREMKV 482

Query: 479 GYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLIAA 529
             +FI+HDL V   + D VLVM KG V+EQG    IF  P H YT+KL+AA
Sbjct: 483 AMIFITHDLRVASQICDDVLVMHKGTVVEQGPPTKIFRAPTHPYTQKLVAA 533



 Score =  193 bits (491), Expect = 1e-53
 Identities = 116/271 (42%), Positives = 164/271 (60%), Gaps = 15/271 (5%)

Query: 6   LLQVRNL------SVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQL 59
           +L+V NL      S SF      V AV NVSF +R G+TL +VGESGSGKS     L++L
Sbjct: 282 VLEVENLEKEYRSSGSFFRKARTVKAVNNVSFKLRKGQTLGVVGESGSGKSSLGRVLLKL 341

Query: 60  LPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEA 119
           L  +       +I F+G ++    ++  R +R   I MIFQ+P  SLNP   +G  +   
Sbjct: 342 LDPDG-----GAIRFDGRDIATMDESAFRALR-PYIQMIFQDPFASLNPRHTIGKILTVG 395

Query: 120 IRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDIL 179
              H  ++ ++A+ + L + +LV L +   AY +FPHEFSGGQ QRI IA AL+ +P +L
Sbjct: 396 PLAH-GMALHEARTKALGILKLVGLDEQ--AYDRFPHEFSGGQRQRIGIARALMFDPVVL 452

Query: 180 IADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQ 239
           +ADE  +ALDV++QA+VL L+  +Q  M +A++FITHDL V   + D VLVM KG VVEQ
Sbjct: 453 VADEAVSALDVSIQAQVLELLARVQREMKVAMIFITHDLRVASQICDDVLVMHKGTVVEQ 512

Query: 240 GSTEQLFLQPEHDYTRMLINSIPKGSKDPVA 270
           G   ++F  P H YT+ L+ +IP    +P A
Sbjct: 513 GPPTKIFRAPTHPYTQKLVAAIPGADWEPSA 543