Pairwise Alignments

Query, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., ABC transporter, nucleotide binding/ATPase protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  412 bits (1059), Expect = e-119
 Identities = 241/563 (42%), Positives = 344/563 (61%), Gaps = 40/563 (7%)

Query: 6   LLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNAR 65
           LL++ NL VSF+   G +DAV++ S  I PG+  A+VGESGSGKSV    +M + PK AR
Sbjct: 7   LLRIENLRVSFSLMGGTIDAVRDTSLRILPGKVTALVGESGSGKSVIGQTIMGIHPKTAR 66

Query: 66  IH-------PESSIMFEGEEL-LNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVA 117
           ++       PE++     + L L K   ++R IRG+RIG+IFQEPMTS +P   +G Q+ 
Sbjct: 67  VNGRVLFTDPENAAAGPIDLLQLPKDGREIRSIRGNRIGLIFQEPMTSFSPLHTIGNQID 126

Query: 118 EAIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPD 177
           EA+R H  +S  +  +++ E   LV    PK     +P E SGG  QR MIAMALI  P 
Sbjct: 127 EALRIHSILSPAERAEKMYETLDLVGFSKPKKVVNMYPFELSGGMRQRAMIAMALICRPA 186

Query: 178 ILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVV 237
           +LIADEPTTALDVT+QA++L+L++++Q+ + M++L ITHDLGVV  +AD V V+ +G+++
Sbjct: 187 LLIADEPTTALDVTIQAQILKLLRDLQSRLNMSMLLITHDLGVVANIADEVAVIYQGEIM 246

Query: 238 EQGSTEQLFLQPEHDYTRMLINSIPKGSKDP---------VAVDAAPLLKAEDIRVKFLV 288
           E G+ + +F  P H Y + L+ ++P     P         + VD   L+  +   V    
Sbjct: 247 EAGTVDDIFKAPGHPYLKGLMAAVPHFDMKPGERLKALREIKVDHESLVGKKTAAVNKTP 306

Query: 289 KPY---------FISRRNQYF--------EAVKGISLELKQGETLGIVGESGSGKSTLGR 331
            P          F +R++ +F        +AV  +S E+ +GE LG+VGESGSGK+T+ +
Sbjct: 307 GPLLTVDNISKTFTTRKSSWFRKSDANATKAVNSVSFEICRGECLGLVGESGSGKTTVSK 366

Query: 332 ALI-GLLPSTGQIAFKGQ--DFRALSEK--QRLALKKDIQMVFQDPYGSLSPRMTVGEII 386
            L+  + P  G I F     D   L+ K      L+  IQMVFQDP  SLSPRMTVG I+
Sbjct: 367 ILMRAVRPDEGSITFHRPEGDIDVLNAKDGDLKELRSKIQMVFQDPISSLSPRMTVGNIL 426

Query: 387 TEGLLVHQPHISKLERMQRARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPS 446
           +E L +H    +K  R ++ R  +  + L  +++NRYPH FSGGQRQRI IARAL L P 
Sbjct: 427 SEPLEIHGRGDAKY-RAEKVRGLVRAIGLGESALNRYPHSFSGGQRQRIGIARALALGPE 485

Query: 447 FILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVM 506
            ++ DEP SALD SVQ  ++ LLK++Q+   + YLFISH+LAVV  ++DRV VM +G+++
Sbjct: 486 LLICDEPVSALDVSVQAQILNLLKDLQQDLGLTYLFISHNLAVVDYMADRVAVMCEGRIV 545

Query: 507 EQGSAESIFHNPQHEYTKKLIAA 529
           E    E +  +P H YTK L+AA
Sbjct: 546 ELAPREILMRSPIHPYTKSLLAA 568



 Score =  192 bits (487), Expect = 4e-53
 Identities = 113/274 (41%), Positives = 168/274 (61%), Gaps = 21/274 (7%)

Query: 2   SPNPLLQVRNLSVSFTTNDG---------VVDAVKNVSFDIRPGETLAIVGESGSGKSVS 52
           +P PLL V N+S +FTT               AV +VSF+I  GE L +VGESGSGK+  
Sbjct: 305 TPGPLLTVDNISKTFTTRKSSWFRKSDANATKAVNSVSFEICRGECLGLVGESGSGKTTV 364

Query: 53  TNALMQLLPKNARIHPESSIMF---EGE-ELLNKTDTQMRRIRGDRIGMIFQEPMTSLNP 108
           +  LM+ +  +     E SI F   EG+ ++LN  D  ++ +R  +I M+FQ+P++SL+P
Sbjct: 365 SKILMRAVRPD-----EGSITFHRPEGDIDVLNAKDGDLKELRS-KIQMVFQDPISSLSP 418

Query: 109 YMRVGVQVAEAIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMI 168
            M VG  ++E +  H         ++V  L + + L +   A  ++PH FSGGQ QRI I
Sbjct: 419 RMTVGNILSEPLEIHGRGDAKYRAEKVRGLVRAIGLGE--SALNRYPHSFSGGQRQRIGI 476

Query: 169 AMALINEPDILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRV 228
           A AL   P++LI DEP +ALDV+VQA++L L+K++Q ++G+  LFI+H+L VV ++ADRV
Sbjct: 477 ARALALGPELLICDEPVSALDVSVQAQILNLLKDLQQDLGLTYLFISHNLAVVDYMADRV 536

Query: 229 LVMCKGDVVEQGSTEQLFLQPEHDYTRMLINSIP 262
            VMC+G +VE    E L   P H YT+ L+ ++P
Sbjct: 537 AVMCEGRIVELAPREILMRSPIHPYTKSLLAAVP 570