Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  241 bits (614), Expect = 9e-68
 Identities = 141/375 (37%), Positives = 229/375 (61%), Gaps = 7/375 (1%)

Query: 194 ATTSMEQSAQSNAVVMRNAMI---TVLSVLM--LSVLAAWLLSGQIVAPINSLQSVMRKL 248
           A  +  Q  QS+    R   I   T+  +L+  + +L  WL+   I  P+  + +++  +
Sbjct: 338 AVMADSQKLQSDLEAQRKTDIFGMTIAGLLIAGIGLLVIWLVGHGIARPLKQMVAMLNDI 397

Query: 249 AQG--DLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQ 306
           AQG  DL+ +  +D  +E+  ++   NT + +L   + Q+    ++V+ +S   A +  +
Sbjct: 398 AQGEGDLTRRLTSDRADELGAIANGFNTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIR 457

Query: 307 AESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQA 366
                  +++EI+QVA+AV+E+ +TA +V+ NA+ A   A  AD+ A  G+ I +++S +
Sbjct: 458 TNQGVHKQMVEIDQVATAVHEMTATAQDVARNATQAAQAASHADQAASQGMRIVRDTSTS 517

Query: 367 SEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGF 426
              +A  +  A  VV  L + SE I+ ++  IRG+++QTNLLALNAAIEAARAGE GRGF
Sbjct: 518 IGALAEEIGKAVSVVQTLAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGF 577

Query: 427 AVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDAL 486
           AVVADEVR LA +TQ +T+EIQ +I++LQ  +      M+ S     ++    AKA +AL
Sbjct: 578 AVVADEVRNLAQKTQKATEEIQTMIQQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEAL 637

Query: 487 IGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELS 546
             IT++VS IND N Q+A+AAE+QS V +DINRNV N+  + ++   G  +S++AS +L+
Sbjct: 638 ETITQAVSVINDMNTQIASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASADLT 697

Query: 547 HLAEKQKAQLSFFKL 561
            LAE+Q+  ++ FK+
Sbjct: 698 KLAEQQRRLINQFKV 712



 Score = 39.3 bits (90), Expect = 5e-07
 Identities = 56/301 (18%), Positives = 119/301 (39%), Gaps = 42/301 (13%)

Query: 101 NNFIAELREGLTEVQSALSSIEQDAQFSRDVP------VVKQSIEI--YVAESQKMVALF 152
           N F+ +L+  +T+V S++  +   ++ + D+       V KQ +EI        +M A  
Sbjct: 424 NTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVATAVHEMTATA 483

Query: 153 NRLDQGLATREEANVFIQSFRETGNRMI----SAINDLSQKVNHYATTSMEQSAQSNAVV 208
             + +      +A          G R++    ++I  L++++    +     +  S  + 
Sbjct: 484 QDVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAEEIGKAVSVVQTLAKDSENI- 542

Query: 209 MRNAMITVL-------SVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGDLSVKADADG 261
             NA++T +       ++L L+       +G+       +   +R LAQ           
Sbjct: 543 --NAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQ----------- 589

Query: 262 ENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVAS---ASTELAAVMTQAESNAQMELMEI 318
             +  K ++++ T + QL      + R+ E+  S    S + AA   +A       +  I
Sbjct: 590 --KTQKATEEIQTMIQQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEALETITQAVSVI 647

Query: 319 E----QVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALAL 374
                Q+ASA  E ++ A++++ N  +    A E    A    A   + ++ +EQ    +
Sbjct: 648 NDMNTQIASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQRRLI 707

Query: 375 N 375
           N
Sbjct: 708 N 708