Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  232 bits (592), Expect = 3e-65
 Identities = 133/352 (37%), Positives = 223/352 (63%), Gaps = 2/352 (0%)

Query: 212 AMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGD--LSVKADADGENEIAKLS 269
           A++   +  +L +L  WL +  +  PIN++ ++++ +A GD  L+ +     ++E+ +L+
Sbjct: 361 ALLVGAAAALLGLLLIWLTATGVTRPINNVAAMLKDIASGDGDLTQRLAYAKKDELGELA 420

Query: 270 QDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQVASAVNELA 329
              N  + +L  T+ Q+ +   E    + + +A+  Q     Q++  EI+QVA+A NE++
Sbjct: 421 NWFNRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATASNEMS 480

Query: 330 STADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRLKEQSE 389
           +TA +V+++AS+A + AR AD+ A+ G++I ++S++    +A  ++ A   V  L   SE
Sbjct: 481 ATAHDVANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSE 540

Query: 390 QISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKEIQA 449
           QI +V+EVIR +++QTNLLALNAAIEAARAGESGRGFAVVADEVR LA RTQ S +EI+ 
Sbjct: 541 QIGSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRL 600

Query: 450 IIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNAQVATAAEQ 509
           +IE +Q+ +     +M +S      N     +A  AL  I+++V+ I+D N Q+A+AAEQ
Sbjct: 601 VIERIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQ 660

Query: 510 QSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQLSFFKL 561
           QS V +++NRNVS + T+        ++SA+ S++L+ LA +Q   +  F++
Sbjct: 661 QSAVAEEVNRNVSAIRTVTETLTGQATESAAISSQLNALASQQMKLMDQFRV 712



 Score = 26.2 bits (56), Expect = 0.005
 Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 9/116 (7%)

Query: 97  AERRNNFIAELREGLTEVQSALSSI-----EQDAQFSRDVPVVKQSIEIYVAESQKMVAL 151
           A+R  + + E+R  +  +QS    +        +Q   +   + Q+ +  + +    V +
Sbjct: 588 AKRTQDSVEEIRLVIERIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQA-LGKISDAVTV 646

Query: 152 FNRLDQGLATREEANVFIQSFRETGNRMISAINDLSQKVNHYATTSMEQSAQSNAV 207
            + ++  +A+  E      +  E  NR +SAI  +++ +   AT S   S+Q NA+
Sbjct: 647 ISDMNLQIASAAEQQ---SAVAEEVNRNVSAIRTVTETLTGQATESAAISSQLNAL 699