Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  233 bits (594), Expect = 1e-65
 Identities = 154/447 (34%), Positives = 251/447 (56%), Gaps = 8/447 (1%)

Query: 115 QSALSSIEQDAQFSRDVPVVKQSIEIYVAESQKMVALFNRLDQGLATREEANVFIQSFRE 174
           +  + S E+ A +   V ++ Q  +I   E  K ++  N++++    R   N  + S  E
Sbjct: 103 EKLIESSEERAAYDDYVRLLGQYHQI--EERMKSLSRANQVEE---LRSLLNNELLSNSE 157

Query: 175 TGNRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQI 234
             N +++ + D++ K+     T+ +   Q N        + V++ L L++L AWLL+  I
Sbjct: 158 QVNAVLTRLLDINNKMA--LATNKDAEDQYNMAFNMVVSLLVIATL-LTLLFAWLLTRSI 214

Query: 235 VAPINSLQSVMRKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVA 294
             PI        ++A+G+L+     DG +E  +L   +     +L  T++++   + ++A
Sbjct: 215 TLPIAQALEAAEEVAEGNLTRPIKVDGSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLA 274

Query: 295 SASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAK 354
           SA+ EL AV  ++      +  EIEQ A+AVNE+ S  + V+ NA S    +R A   A 
Sbjct: 275 SAAEELNAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSEASRNATTSAG 334

Query: 355 SGLAIFKESSQASEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAI 414
            G  + +E+  A E+M+  +   A ++  L  +S  I  V++VIRG++DQTNLLALNAAI
Sbjct: 335 DGRDLVQETVSAIERMSGDVQATATLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAI 394

Query: 415 EAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQ 474
           EAARAGE+GRGFAVVADEVR LA RTQ ST EI+ +I  +Q  +  A DSM+ S +    
Sbjct: 395 EAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQAGTEHAVDSMRNSTERAES 454

Query: 475 NKALTAKANDALIGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTG 534
              +   A  +L  I  ++ +IN+ N  +A+AAE+Q+ V ++++RN+ N+  L  Q+ TG
Sbjct: 455 TLNIAKGAGMSLDTINTAIVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATG 514

Query: 535 ISQSASASNELSHLAEKQKAQLSFFKL 561
            SQ+++AS+ELS LA      +  F+L
Sbjct: 515 ASQTSAASSELSRLAVDLNGMVGRFRL 541