Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  223 bits (568), Expect = 1e-62
 Identities = 165/537 (30%), Positives = 288/537 (53%), Gaps = 19/537 (3%)

Query: 23  SLKNLSIRLQVLLP--VLFTMIALVIALWITKVNLTHEQQAIADNTHALVRYKDTIAQID 80
           SL+N+ I L+  L   VL +++ +V    + ++    +   + + +     +  +I  I 
Sbjct: 2   SLRNMRIGLRASLSFGVLASLLVIVGMFGLGQMAKLRQSALVIEAS-----WMPSIENIH 56

Query: 81  DT---IYPLRISAV-YAIYDAER-RNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVVK 135
           D+   +  +R+ A+  A  D  R R+N  A +    TE+Q+ L   +       +  ++ 
Sbjct: 57  DSAAIVASIRLEALRLATTDESRIRDNSKALITRQHTELQTLLDHHKTLLSGDEEREMLT 116

Query: 136 Q---SIEIYVAESQKMVALFNRLDQGLATREEANVFIQSFRETGNRMISAINDLSQKVNH 192
           Q   +   Y++   ++VAL ++  Q    ++  ++        G  +  ++ D+      
Sbjct: 117 QLEGNANAYLSLVGQIVALVDKDQQ----QDAIDLLNSRLAPQGVILNKSLTDMITFNQS 172

Query: 193 YATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGD 252
              T+++ +AQ+ +         ++  L  ++L AWLL+  I AP+     V R +A GD
Sbjct: 173 GVQTAVDSAAQTYSSAQWIVGSIIVLALTATLLLAWLLTRSITAPLGQALIVARTIASGD 232

Query: 253 LSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQ 312
           LS      G++E A+L   + T   QL  T+  ++  ++++  A+ E+++VM Q+  + Q
Sbjct: 233 LSQPIAVSGKDEPAQLLTALATMQAQLQGTLRGISESAQQLGCAAEEMSSVMEQSTRDLQ 292

Query: 313 MELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMAL 372
            +  EIEQ A+AV E+++  D V+ NA S+   ++ +DE +K G     E+  + + +  
Sbjct: 293 AQNDEIEQAATAVTEMSAAVDEVAGNAVSSAEASQASDEDSKHGHYQISETISSIQNLVD 352

Query: 373 ALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADE 432
            +  A+     L  Q++ IS V+EVIRG++ QTNLLALNAAIEAARAGE+GRGFAVVADE
Sbjct: 353 EVLGASNKAEGLAVQAQDISKVLEVIRGIAAQTNLLALNAAIEAARAGEAGRGFAVVADE 412

Query: 433 VRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITES 492
           VR LA RTQ ST+EI+ +I  +Q  +    +++ +S +           A  AL  IT +
Sbjct: 413 VRSLAQRTQDSTEEIEQMITGIQQGTQGTVEALNSSAEQAGHTLQRANSAGSALEKITAA 472

Query: 493 VSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLA 549
           +S I+  N  +A+AAEQQ+ V +D++R++ N+  L  Q   G +Q+++AS ELS LA
Sbjct: 473 ISQISQRNLVIASAAEQQALVARDVDRSLVNIRDLSTQTAAGATQTSAASQELSRLA 529