Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  216 bits (549), Expect = 2e-60
 Identities = 152/479 (31%), Positives = 263/479 (54%), Gaps = 27/479 (5%)

Query: 96  DAERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQSIEIYVAESQKMVALFNR- 154
           D ++    I   R+ +TE  + L  +   A+       +K   E YVA   ++ AL  + 
Sbjct: 75  DNQQAQEAIGGTRQRITEAFATLEPLLDTAEGKAAYATLKTHREAYVAAFTQVQALIKQG 134

Query: 155 -LDQGLATREEANVFIQSFRETGNRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAM 213
             +QGLA  ++    +        + + A+  +  ++        EQ+AQ      R  M
Sbjct: 135 AREQGLAQLKQQ---VMPAELAVFKSLDALMAMQGRL----FAEREQAAQVLYDEARRNM 187

Query: 214 ITV-LSVLMLSVLAAWLLSGQIVAPI----NSLQSVMRKLAQGDLSV------KADADGE 262
           I + L  L L V AA +++  ++ P+    +    V+  +AQGDL++       A+    
Sbjct: 188 IGLFLLCLALVVAAAIIVTRSVIRPLGGEPDEAARVLSHIAQGDLTIVVPVGNSAEGSVM 247

Query: 263 NEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQVA 322
             + ++ Q++N  V  + T+V+        VAS+S EL+AV +Q  S+ Q +  EIEQ A
Sbjct: 248 RNLHQMQQNLNQMVRHIATSVDG-------VASSSEELSAVSSQTSSSLQSQGQEIEQAA 300

Query: 323 SAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVL 382
           +AVNE+ +  D V+ NA S    +R +++ A+ G A  +E+  +   +A  + + +  + 
Sbjct: 301 TAVNEMTAAVDEVARNAVSTSEASRLSEQTAQRGRAQVQETVASINTLATGVVETSERIQ 360

Query: 383 RLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQA 442
           +L  + + IS+V+EVIR ++DQTNLLALNAAIEAARAG++GRGFAVVADEVR LA RTQA
Sbjct: 361 QLAGRVQDISSVLEVIRSIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQA 420

Query: 443 STKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNAQ 502
           ST+EI+ +I  ++  +  A  +M +S + +    ++  ++ +AL  IT S+S IN+ N  
Sbjct: 421 STQEIEQMIGNIRQDTEHAVAAMHSSSERVQATLSVAQRSGEALDEITRSISQINERNMM 480

Query: 503 VATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQLSFFKL 561
           +A+A E+Q+ V ++++RN+  +  L  Q + G   + +A ++L+ +A      ++ FK+
Sbjct: 481 IASATEEQALVAREVDRNLVGIRNLSQQVLQGALHTETAGHDLAGMAGALHQTVARFKV 539



 Score = 39.3 bits (90), Expect = 4e-07
 Identities = 72/389 (18%), Positives = 143/389 (36%), Gaps = 39/389 (10%)

Query: 39  FTMIALVIALWITKVNLTHEQQAIADNTHALVRYKDTIAQIDDTIYPLRISAVYAIYDAE 98
           FT +  +I     +  L   +Q +     A+ +  D +  +   ++  R  A   +YD  
Sbjct: 124 FTQVQALIKQGAREQGLAQLKQQVMPAELAVFKSLDALMAMQGRLFAEREQAAQVLYDEA 183

Query: 99  RRN---------------------NFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQS 137
           RRN                     + I  L     E    LS I Q    +  VPV   +
Sbjct: 184 RRNMIGLFLLCLALVVAAAIIVTRSVIRPLGGEPDEAARVLSHIAQ-GDLTIVVPVGNSA 242

Query: 138 IEIYVAESQKMVALFNRLDQGLATREEANV-FIQSFRETGNRMISAINDLSQKVNHYATT 196
               +    +M    N++ + +AT  +      +      ++  S++    Q++   AT 
Sbjct: 243 EGSVMRNLHQMQQNLNQMVRHIATSVDGVASSSEELSAVSSQTSSSLQSQGQEIEQAATA 302

Query: 197 SMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGDLSVK 256
             E +A  + V  RNA ++      LS   A     Q+   + S+ ++   + +    ++
Sbjct: 303 VNEMTAAVDEVA-RNA-VSTSEASRLSEQTAQRGRAQVQETVASINTLATGVVETSERIQ 360

Query: 257 ADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNA---QM 313
             A    +I+ + + + +   Q           +     A    A V  +  + A   Q 
Sbjct: 361 QLAGRVQDISSVLEVIRSIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQA 420

Query: 314 ELMEIEQVAS--------AVNELASTADNVSDNASSADATAREADELAKSGLAIFKES-- 363
              EIEQ+          AV  + S+++ V    S A  +    DE+ +S   I + +  
Sbjct: 421 STQEIEQMIGNIRQDTEHAVAAMHSSSERVQATLSVAQRSGEALDEITRSISQINERNMM 480

Query: 364 -SQASEQMALALNDAARVVLRLKEQSEQI 391
            + A+E+ AL   +  R ++ ++  S+Q+
Sbjct: 481 IASATEEQALVAREVDRNLVGIRNLSQQV 509