Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  197 bits (501), Expect = 8e-55
 Identities = 120/302 (39%), Positives = 187/302 (61%), Gaps = 17/302 (5%)

Query: 264 EIAKLSQD--VNTTVTQLYTTVEQLTRI---SEEVASASTELAAVMTQAESNAQMELMEI 318
           E A LSQ+  + T +T+L  + EQL+ +   S+++ASAS++              + +E 
Sbjct: 229 ETAFLSQNARLKTCLTRLQDSAEQLSALAGQSDQLASASSK----------GLDRQRVET 278

Query: 319 EQVASAVNELASTADNVSDNAS-SADATAREADELAKSGLAIFKESSQASEQMALALNDA 377
           EQV++AVN++A+T   V+ +   +ADAT ++A+ L   G  + +++ +A E+++  +++ 
Sbjct: 279 EQVSAAVNQMAATTQEVASHVQRTADAT-QQANVLTGRGREVARDTREAIERLSAVVSET 337

Query: 378 ARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLA 437
              V +L + S +I +V++VI+G++DQTNLLALNAAIEAARAGE GRGFAVVADEVR LA
Sbjct: 338 GVTVAQLAKDSNEIGSVVDVIKGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLA 397

Query: 438 ARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDIN 497
            RT  ST +I  +I +LQ  S  A  SM+       +  A   +A+ AL+GI+E+VS I 
Sbjct: 398 QRTSQSTTQIHGLITQLQASSNNAVQSMENGQRQAQEGVAWVLEADQALVGISEAVSHIT 457

Query: 498 DSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQLS 557
           D   Q+A A E+QS V ++I+RN++ ++ L  Q      QS   S EL++ A  Q A + 
Sbjct: 458 DMTTQIAAATEEQSAVAEEISRNITTIAELADQTSLQAHQSTDLSKELTNTASTQYALVE 517

Query: 558 FF 559
            F
Sbjct: 518 RF 519